MANIFEST.in
README.rst
setup.cfg
setup.py
OpenEye_toolkits_python3_linux_x64.egg-info/PKG-INFO
OpenEye_toolkits_python3_linux_x64.egg-info/SOURCES.txt
OpenEye_toolkits_python3_linux_x64.egg-info/dependency_links.txt
OpenEye_toolkits_python3_linux_x64.egg-info/not-zip-safe
OpenEye_toolkits_python3_linux_x64.egg-info/top_level.txt
openeye/__init__.py
openeye/oechem.py
openeye/oedepict.py
openeye/oedocking.py
openeye/oefastrocs.py
openeye/oeff.py
openeye/oegrapheme.py
openeye/oegraphsim.py
openeye/oegrid.py
openeye/oeiupac.py
openeye/oemedchem.py
openeye/oemolprop.py
openeye/oeomega.py
openeye/oequacpac.py
openeye/oeshape.py
openeye/oespicoli.py
openeye/oespruce.py
openeye/oestats.py
openeye/oeszmap.py
openeye/oeszybki.py
openeye/oezap.py
openeye/docexamples/__init__.py
openeye/docexamples/bio/AltlocfactGroupsDoc.py
openeye/docexamples/bio/AltlocfactMakeAltMolDoc.py
openeye/docexamples/bio/AtomMatchResidue.py
openeye/docexamples/bio/DesignUnit.py
openeye/docexamples/bio/InteractionGeometry.py
openeye/docexamples/bio/MSE2METDoc.py
openeye/docexamples/bio/OEGetCrystalSymmetry.py
openeye/docexamples/bio/OESetCrystalSymmetry.py
openeye/docexamples/bio/PlaceHydrogensPredDoc.py
openeye/docexamples/bio/PrepStepsDoc.py
openeye/docexamples/bio/RamaOutlierCheck.py
openeye/docexamples/bio/ResAtomsDoc.py
openeye/docexamples/bio/ResCountDoc.py
openeye/docexamples/bio/SimpleResCountDoc.py
openeye/docexamples/bio/SplitMolComplexDoc.py
openeye/docexamples/bio/SplitMolComplexIterDoc.py
openeye/docexamples/bio/SplitMolComplexLowLevelDoc.py
openeye/docexamples/bio/SplitMolComplexOptDoc.py
openeye/docexamples/bio/__init__.py
openeye/docexamples/depict/AccessAtomDisplay.py
openeye/docexamples/depict/AccessBondDisplay.py
openeye/docexamples/depict/AddAtomClickEvent.py
openeye/docexamples/depict/AddBondClickEvent.py
openeye/docexamples/depict/AddSVGClickEvent.py
openeye/docexamples/depict/AddSVGHover.py
openeye/docexamples/depict/AddSVGToggle.py
openeye/docexamples/depict/AtomDisplayLabel.py
openeye/docexamples/depict/AtomPropIndex.py
openeye/docexamples/depict/AtomPropUser.py
openeye/docexamples/depict/AtomVisibility.py
openeye/docexamples/depict/BondPropIndex.py
openeye/docexamples/depict/BondPropUser.py
openeye/docexamples/depict/CreateSVGClass.py
openeye/docexamples/depict/CreateSVGGroup.py
openeye/docexamples/depict/DepictMDLQuery.py
openeye/docexamples/depict/DepictMDLReaction.py
openeye/docexamples/depict/DepictMDLReactionMapIdx.py
openeye/docexamples/depict/DepictMolConfigure.py
openeye/docexamples/depict/DepictMolGraph.py
openeye/docexamples/depict/DepictMolRealSize.py
openeye/docexamples/depict/DepictMolSimple.py
openeye/docexamples/depict/DepictMolSize.py
openeye/docexamples/depict/DepictMolStyle.py
openeye/docexamples/depict/DepictMolTransparent.py
openeye/docexamples/depict/DepictMolWithHyperlink.py
openeye/docexamples/depict/DrawLine.py
openeye/docexamples/depict/DrawObjects.py
openeye/docexamples/depict/FPAlign.py
openeye/docexamples/depict/FPNoAlignment.py
openeye/docexamples/depict/FormatSupport.py
openeye/docexamples/depict/HighlightByBallAndStick.py
openeye/docexamples/depict/HighlightByCogwheel.py
openeye/docexamples/depict/HighlightByColor.py
openeye/docexamples/depict/HighlightByLasso.py
openeye/docexamples/depict/HighlightByStick.py
openeye/docexamples/depict/HighlightMulti.py
openeye/docexamples/depict/HighlightOverlay.py
openeye/docexamples/depict/HighlightOverlayBallStick.py
openeye/docexamples/depict/HighlightSimple.py
openeye/docexamples/depict/HighlightStyle.py
openeye/docexamples/depict/HoverAtomText.py
openeye/docexamples/depict/HoverBondText.py
openeye/docexamples/depict/ImageFrame.py
openeye/docexamples/depict/ImageGridAutoScale.py
openeye/docexamples/depict/ImageGridFixedScale.py
openeye/docexamples/depict/ImageGridIter.py
openeye/docexamples/depict/ImageGridSimple.py
openeye/docexamples/depict/ImageScale.py
openeye/docexamples/depict/ImageTable.py
openeye/docexamples/depict/LegendLayout.py
openeye/docexamples/depict/MCSAlign.py
openeye/docexamples/depict/MCSNoAlignment.py
openeye/docexamples/depict/MultiPage.py
openeye/docexamples/depict/MultiPageReport.py
openeye/docexamples/depict/OE2DMolDisplayOpts.py
openeye/docexamples/depict/OEAddHighlighting_Base.py
openeye/docexamples/depict/OEAddHighlighting_Style.py
openeye/docexamples/depict/OEAddLabel.py
openeye/docexamples/depict/OEAnnotateDepictionProblems.py
openeye/docexamples/depict/OEAnnotateValenceProblems.py
openeye/docexamples/depict/OEConfigureColor.py
openeye/docexamples/depict/OEDrawBorder.py
openeye/docexamples/depict/OEDrawTextToCenter.py
openeye/docexamples/depict/OEFont_SetProperties.py
openeye/docexamples/depict/OEHighlightLabel_SetProps.py
openeye/docexamples/depict/OEImageTableOpts_SetProps.py
openeye/docexamples/depict/OEIsRegisteredImageFile.py
openeye/docexamples/depict/OEPen_SetProperties.py
openeye/docexamples/depict/OERenderMolecule_fname_disp.py
openeye/docexamples/depict/OERenderMolecule_fname_mol.py
openeye/docexamples/depict/OERenderMolecule_image_disp.py
openeye/docexamples/depict/OERenderMolecule_image_mol.py
openeye/docexamples/depict/OERenderMolecule_stream_disp.py
openeye/docexamples/depict/OERenderMolecule_stream_mol.py
openeye/docexamples/depict/OEReportIter.py
openeye/docexamples/depict/OEReportOptions_SetProps.py
openeye/docexamples/depict/PrepareDepiction.py
openeye/docexamples/depict/RenderMoleculeToString.py
openeye/docexamples/depict/SubSearchAlign.py
openeye/docexamples/depict/SubSearchNoAlignment.py
openeye/docexamples/depict/ToggleAtomText.py
openeye/docexamples/depict/ToggleBondText.py
openeye/docexamples/depict/UserAtomMarkup.py
openeye/docexamples/depict/UserBondMarkup.py
openeye/docexamples/depict/WriteImageToString.py
openeye/docexamples/depict/WriteReportToString.py
openeye/docexamples/depict/__init__.py
openeye/docexamples/docking/DockScoreTagging.py
openeye/docexamples/docking/DockScoring.py
openeye/docexamples/docking/RecBoundLigandEdit.py
openeye/docexamples/docking/RecCustomConstraintEdit.py
openeye/docexamples/docking/RecExtraMoleculesEdit.py
openeye/docexamples/docking/RecProtConstraintEdit.py
openeye/docexamples/docking/ReceptorIO.py
openeye/docexamples/docking/ScoreBox.py
openeye/docexamples/docking/ScoreReceptor.py
openeye/docexamples/docking/ScoreTagging.py
openeye/docexamples/docking/__init__.py
openeye/docexamples/grapheme/ActiveSiteHighlight.py
openeye/docexamples/grapheme/AnnotateAtomPredicate.py
openeye/docexamples/grapheme/AnnotateBondPredicate.py
openeye/docexamples/grapheme/AnnotatePartialCharge.py
openeye/docexamples/grapheme/Draw2DPropMapPChargeMulti.py
openeye/docexamples/grapheme/Draw2DPropMapPartialCharge.py
openeye/docexamples/grapheme/Draw2DSurface.py
openeye/docexamples/grapheme/Draw2DSurfacePartialCharge.py
openeye/docexamples/grapheme/Draw2DSurfaceUserDefined.py
openeye/docexamples/grapheme/Draw2DSurfaceVariousRadii.py
openeye/docexamples/grapheme/DrawActiveSiteLegend.py
openeye/docexamples/grapheme/DrawColorForceFieldLegend.py
openeye/docexamples/grapheme/DrawColorGradient.py
openeye/docexamples/grapheme/DrawComplexSurface.py
openeye/docexamples/grapheme/DrawComplexSurfaceUserDef.py
openeye/docexamples/grapheme/DrawIridiumData.py
openeye/docexamples/grapheme/DrawMultiple2DSurfaces.py
openeye/docexamples/grapheme/DrawPeptide.py
openeye/docexamples/grapheme/DrawROCSScores.py
openeye/docexamples/grapheme/OE2DPropMap_SetProperties.py
openeye/docexamples/grapheme/OEColorGradientDispOpts.py
openeye/docexamples/grapheme/OEPeptideDispOpts_SetOpts.py
openeye/docexamples/grapheme/OERenderActiveSite_fname.py
openeye/docexamples/grapheme/OERenderActiveSite_image.py
openeye/docexamples/grapheme/OERenderActiveSite_stream.py
openeye/docexamples/grapheme/PrepareAlignedDepictFrom3D.py
openeye/docexamples/grapheme/RenderActiveSiteMaps.py
openeye/docexamples/grapheme/RenderBFactorMap.py
openeye/docexamples/grapheme/RenderColorOverlap.py
openeye/docexamples/grapheme/RenderContactMap.py
openeye/docexamples/grapheme/RenderRamachandranPlot.py
openeye/docexamples/grapheme/RenderShapeOverlap.py
openeye/docexamples/grapheme/RenderShapeQuery.py
openeye/docexamples/grapheme/RenderUnpairedMap.py
openeye/docexamples/grapheme/SVGMarkResidues.py
openeye/docexamples/grapheme/__init__.py
openeye/docexamples/graphsim/CircularFPDefaultParams.py
openeye/docexamples/graphsim/DBSimCalcFromFile.py
openeye/docexamples/graphsim/DBSimCalcFromOEB.py
openeye/docexamples/graphsim/FP2OEB.py
openeye/docexamples/graphsim/FP2SDF.py
openeye/docexamples/graphsim/FPAtomTyping.py
openeye/docexamples/graphsim/FPBitString.py
openeye/docexamples/graphsim/FPCompare.py
openeye/docexamples/graphsim/FPCoverage.py
openeye/docexamples/graphsim/FPData.py
openeye/docexamples/graphsim/FPOverlap.py
openeye/docexamples/graphsim/FPPathLength.py
openeye/docexamples/graphsim/FPPattern.py
openeye/docexamples/graphsim/FPTanimoto.py
openeye/docexamples/graphsim/FPType.py
openeye/docexamples/graphsim/FPTypeParams.py
openeye/docexamples/graphsim/FPTypeString.py
openeye/docexamples/graphsim/FPYule.py
openeye/docexamples/graphsim/GetScores.py
openeye/docexamples/graphsim/MakeCircularFP.py
openeye/docexamples/graphsim/MakeFP.py
openeye/docexamples/graphsim/MakeLingoFP.py
openeye/docexamples/graphsim/MakeMaccsFP.py
openeye/docexamples/graphsim/MakePathFP.py
openeye/docexamples/graphsim/MakeTreeFP.py
openeye/docexamples/graphsim/MemSimSearch.py
openeye/docexamples/graphsim/PathFPDefaultParams.py
openeye/docexamples/graphsim/PathFPType.py
openeye/docexamples/graphsim/SDF2FP.py
openeye/docexamples/graphsim/SimCalcFromFile.py
openeye/docexamples/graphsim/SimCalcFromOEB.py
openeye/docexamples/graphsim/SimFunc.py
openeye/docexamples/graphsim/SortedSearch.py
openeye/docexamples/graphsim/TreeFPDefaultParams.py
openeye/docexamples/graphsim/__init__.py
openeye/docexamples/grid/ASCIIWriter.py
openeye/docexamples/grid/AttachGaussianGrid.py
openeye/docexamples/grid/NeighborPoints.py
openeye/docexamples/grid/OEMakeGridFromCenterAndExtents.py
openeye/docexamples/grid/ScalarGridCtor.py
openeye/docexamples/grid/SpatialCoordAccess.py
openeye/docexamples/grid/SquarePoints.py
openeye/docexamples/grid/__init__.py
openeye/docexamples/medchem/ChEMBLSolubilityUsage.py
openeye/docexamples/medchem/FindSimpleMatchedPairs.py
openeye/docexamples/medchem/FragRingChain.py
openeye/docexamples/medchem/MoleculeToCoreExample.py
openeye/docexamples/medchem/OEGetBemisMurcko.py
openeye/docexamples/medchem/SerializeIndex.py
openeye/docexamples/medchem/__init__.py
openeye/docexamples/molprop/PSAAtomContributions.py
openeye/docexamples/molprop/XLogPAtomContributions.py
openeye/docexamples/molprop/__init__.py
openeye/docexamples/oechem/AddLicenseFromHttp.py
openeye/docexamples/oechem/Aromaticity.py
openeye/docexamples/oechem/AtomMap.py
openeye/docexamples/oechem/AtomSubsetEvil.py
openeye/docexamples/oechem/AtomSubsetGood.py
openeye/docexamples/oechem/CalcAveMolecularWeight.py
openeye/docexamples/oechem/ChangeAromaticityFlavor.py
openeye/docexamples/oechem/ClearAromaticity.py
openeye/docexamples/oechem/CliqueSearch.py
openeye/docexamples/oechem/ClosestConfs.py
openeye/docexamples/oechem/ComplementaryScreen.py
openeye/docexamples/oechem/CompositionFunctorsAtom.py
openeye/docexamples/oechem/CompositionFunctorsBond.py
openeye/docexamples/oechem/ConfBoundingBox.py
openeye/docexamples/oechem/CopyMol.py
openeye/docexamples/oechem/CreateInChIKey.py
openeye/docexamples/oechem/CreateMolDBIdx.py
openeye/docexamples/oechem/CreateNonStandardInChI.py
openeye/docexamples/oechem/CreateOEGraphMol.py
openeye/docexamples/oechem/CreateOEGraphMolFromSMILES.py
openeye/docexamples/oechem/CreateSMILESFromOEGraphMolRW.py
openeye/docexamples/oechem/CreateStandardInChI.py
openeye/docexamples/oechem/CreatingAtoms.py
openeye/docexamples/oechem/CreatingAtoms2.py
openeye/docexamples/oechem/CustomFASTA.py
openeye/docexamples/oechem/CustomMCSFunc.py
openeye/docexamples/oechem/DatabaseExtract.py
openeye/docexamples/oechem/DatabaseSubset.py
openeye/docexamples/oechem/DestroyOEGraphMol.py
openeye/docexamples/oechem/DetermineComponents.py
openeye/docexamples/oechem/EncodeMols.py
openeye/docexamples/oechem/FastaToMol.py
openeye/docexamples/oechem/FilterConfs.py
openeye/docexamples/oechem/FilteredSubSearch.py
openeye/docexamples/oechem/Functors.py
openeye/docexamples/oechem/FunctorsAtom.py
openeye/docexamples/oechem/FunctorsAtomic.py
openeye/docexamples/oechem/FunctorsBond.py
openeye/docexamples/oechem/FunctorsOEMatch.py
openeye/docexamples/oechem/FunctorsOEPartPred.py
openeye/docexamples/oechem/FunctorsOESubsetMol.py
openeye/docexamples/oechem/GenericData.py
openeye/docexamples/oechem/GenericDataContainer.py
openeye/docexamples/oechem/GenericDataIter.py
openeye/docexamples/oechem/GenericDataMol.py
openeye/docexamples/oechem/GenericDataMolWeight.py
openeye/docexamples/oechem/GenericDataToAtom.py
openeye/docexamples/oechem/GenericDataTypeMismatch.py
openeye/docexamples/oechem/GetOEGraphMols.py
openeye/docexamples/oechem/GetTitle.py
openeye/docexamples/oechem/GettingStartedWithOEInterface.py
openeye/docexamples/oechem/LoopingOverBonds.py
openeye/docexamples/oechem/LoopingOverCarbon.py
openeye/docexamples/oechem/LoopingOverMolAtomsBonds.py
openeye/docexamples/oechem/LoopingOverNeighbors1.py
openeye/docexamples/oechem/LoopingOverNeighbors2.py
openeye/docexamples/oechem/MCSSOEExprOpts.py
openeye/docexamples/oechem/MDLQuerySearchMapping.py
openeye/docexamples/oechem/MDLQuerySearchSingleMatch.py
openeye/docexamples/oechem/MMFFAtomType.py
openeye/docexamples/oechem/MakeMDLScreen.py
openeye/docexamples/oechem/MakeMoleculeScreen.py
openeye/docexamples/oechem/MakeSMARTSScreen.py
openeye/docexamples/oechem/MakeScreen.py
openeye/docexamples/oechem/ManipulateGroups.py
openeye/docexamples/oechem/ManipulatePDBData.py
openeye/docexamples/oechem/ManipulateSDData.py
openeye/docexamples/oechem/ManipulateSDDataConvert.py
openeye/docexamples/oechem/MaximumCommonSS.py
openeye/docexamples/oechem/MolBaseType.py
openeye/docexamples/oechem/MolFind.py
openeye/docexamples/oechem/MultiCoreMolFind.py
openeye/docexamples/oechem/NewConfFromCoords.py
openeye/docexamples/oechem/Normalization.py
openeye/docexamples/oechem/NthMolecule.py
openeye/docexamples/oechem/OEAddMols.py
openeye/docexamples/oechem/OEChemIsLicensed.py
openeye/docexamples/oechem/OEGetSmiStringOrder.py
openeye/docexamples/oechem/OEGraphMolFromSMILESAromatic.py
openeye/docexamples/oechem/OEGraphMolFromSMILESCheck.py
openeye/docexamples/oechem/OEInterfaceConfigureCtor.py
openeye/docexamples/oechem/OEInterfaceConvenienceCtor.py
openeye/docexamples/oechem/OEInterfaceMolParam.py
openeye/docexamples/oechem/OEMolToInChI.py
openeye/docexamples/oechem/OEMolToInChIRW.py
openeye/docexamples/oechem/OEMolToSmiles.py
openeye/docexamples/oechem/OEMolToSmilesRW.py
openeye/docexamples/oechem/OERMSD.py
openeye/docexamples/oechem/OERecord.py
openeye/docexamples/oechem/OEThrowFile.py
openeye/docexamples/oechem/PerceiveAromRingSystems.py
openeye/docexamples/oechem/PerceiveAromaticity.py
openeye/docexamples/oechem/PerceiveChiral.py
openeye/docexamples/oechem/PerceiveConnectivity.py
openeye/docexamples/oechem/PerceiveKekule.py
openeye/docexamples/oechem/PerceiveRing.py
openeye/docexamples/oechem/PipelineMolFind.py
openeye/docexamples/oechem/PrintAtomStereo.py
openeye/docexamples/oechem/PrintBondStereo.py
openeye/docexamples/oechem/PrintCIPAtomStereo.py
openeye/docexamples/oechem/PrintCIPBondStereo.py
openeye/docexamples/oechem/ReactionsNonUnique.py
openeye/docexamples/oechem/ReactionsRXN.py
openeye/docexamples/oechem/ReactionsReactantTrace.py
openeye/docexamples/oechem/ReactionsUsingExplH.py
openeye/docexamples/oechem/ReactionsUsingImplH.py
openeye/docexamples/oechem/ReactionsUsingValenceCorr.py
openeye/docexamples/oechem/ReadInMultiConf.py
openeye/docexamples/oechem/ReadMolIntoMemory.py
openeye/docexamples/oechem/ReadWriteCommandLineArgs.py
openeye/docexamples/oechem/ReadWriteCompressedFiles.py
openeye/docexamples/oechem/ReadWriteFlavors.py
openeye/docexamples/oechem/ReadWriteSettingFormats.py
openeye/docexamples/oechem/ReadWriteStdinStdoutFormatC.py
openeye/docexamples/oechem/ReadWriteToFiles.py
openeye/docexamples/oechem/ReuseMolecule.py
openeye/docexamples/oechem/ReuseMoleculeClear.py
openeye/docexamples/oechem/ReuseMoleculeOESmilesToMol.py
openeye/docexamples/oechem/ReverseIteration.py
openeye/docexamples/oechem/RoleSet.py
openeye/docexamples/oechem/ScreenData.py
openeye/docexamples/oechem/ScreenType.py
openeye/docexamples/oechem/ScreenTypeString.py
openeye/docexamples/oechem/SetAtomStereo.py
openeye/docexamples/oechem/SetBondStereo.py
openeye/docexamples/oechem/ShortestPath.py
openeye/docexamples/oechem/SingleThreadedMolFind.py
openeye/docexamples/oechem/SmartsLexReplace.py
openeye/docexamples/oechem/StringIO.py
openeye/docexamples/oechem/SubSearchScreen.py
openeye/docexamples/oechem/SubstructureSearch.py
openeye/docexamples/oechem/SubstructureSearchMatch.py
openeye/docexamples/oechem/ThreadedMolFind.py
openeye/docexamples/oechem/UserPredAtom.py
openeye/docexamples/oechem/UserPredAtomArg.py
openeye/docexamples/oechem/UserPredBond.py
openeye/docexamples/oechem/UserPyAtomPred.py
openeye/docexamples/oechem/UserPyBondPred.py
openeye/docexamples/oechem/UsingOEInterfaceDefaults.py
openeye/docexamples/oechem/UsingOEInterfaceHas.py
openeye/docexamples/oechem/UsingOEInterfaceHelp.py
openeye/docexamples/oechem/UsingOEInterfaceKeyless.py
openeye/docexamples/oechem/UsingOEInterfaceList.py
openeye/docexamples/oechem/UsingOEInterfaceRequired.py
openeye/docexamples/oechem/UsingPeriodicTableFunctions.py
openeye/docexamples/oechem/WriteCSV.py
openeye/docexamples/oechem/XYZWriter.py
openeye/docexamples/oechem/__init__.py
openeye/docexamples/oechem/oemolstream.py
openeye/docexamples/omega/AddTorsionRule.py
openeye/docexamples/omega/__init__.py
openeye/docexamples/quacpac/AssignChargesDoc.py
openeye/docexamples/quacpac/EnumerateTautomersWithOptions.py
openeye/docexamples/quacpac/__init__.py
openeye/docexamples/spicoli/AttachSurface.py
openeye/docexamples/spicoli/CalculateTriangleAreas.py
openeye/docexamples/spicoli/MakeConnectedSurfaceCliques.py
openeye/docexamples/spicoli/SurfaceDataAccess.py
openeye/docexamples/spicoli/__init__.py
openeye/docexamples/szmap/SzmapCalcs.py
openeye/docexamples/szmap/__init__.py
openeye/docexamples/szybki/TorsionScan.py
openeye/docexamples/szybki/__init__.py
openeye/docexamples/zap/DelPhiFlavor.py
openeye/docexamples/zap/OEArea_GetArea.py
openeye/docexamples/zap/OEBind.py
openeye/docexamples/zap/__init__.py
openeye/examples/__init__.py
openeye/examples/openeye_tests.py
openeye/examples/bio/__init__.py
openeye/examples/bio/altlocfactgroups.py
openeye/examples/bio/altlocfactlocations.py
openeye/examples/bio/altlocfactresidues.py
openeye/examples/bio/altlocfactstates.py
openeye/examples/bio/backbone.py
openeye/examples/bio/cischeck.py
openeye/examples/bio/closecontacts.py
openeye/examples/bio/makealpha.py
openeye/examples/bio/phipsi.py
openeye/examples/bio/printinteractions.py
openeye/examples/bio/proteinprep.py
openeye/examples/bio/rescount.py
openeye/examples/bio/reshist.py
openeye/examples/bio/seqalign.py
openeye/examples/bio/splitmolcomplex.py
openeye/examples/bio/splitmolcomplexfrags.py
openeye/examples/bio/splitmolcomplexlowlevel.py
openeye/examples/bio/subsetres.py
openeye/examples/bio/swapaieres.py
openeye/examples/depict/__init__.py
openeye/examples/depict/depict.py
openeye/examples/depict/match2img.py
openeye/examples/depict/mcsalign2D.py
openeye/examples/depict/mdlquery2img.py
openeye/examples/depict/mdlreaction2img.py
openeye/examples/depict/mol2img.py
openeye/examples/depict/mols2img.py
openeye/examples/depict/mols2pdf.py
openeye/examples/depict/ringdict2pdf.py
openeye/examples/depict/smartsalign2D.py
openeye/examples/depict/viewmdlsearch.py
openeye/examples/docking/DockMolecules.py
openeye/examples/docking/MakeReceptorWithBox.py
openeye/examples/docking/MakeReceptorWithDU.py
openeye/examples/docking/MakeReceptorWithHintXYZ.py
openeye/examples/docking/MakeReceptorWithLigand.py
openeye/examples/docking/PoseMolecules.py
openeye/examples/docking/PoseMolsMultiReceptor.py
openeye/examples/docking/PoseMolsProteinFlex.py
openeye/examples/docking/ReceptorOuterContourVolume.py
openeye/examples/docking/RescorePoses.py
openeye/examples/docking/SetOuterContourVolume.py
openeye/examples/docking/ToggleInnerContour.py
openeye/examples/docking/__init__.py
openeye/examples/fastrocs/AsIsStartsExample.py
openeye/examples/fastrocs/BestShapeOverlay.py
openeye/examples/fastrocs/BestShapeOverlayMultiConfQuery.py
openeye/examples/fastrocs/BestTverskyShapeOverlay.py
openeye/examples/fastrocs/CustomColorFFPrep.py
openeye/examples/fastrocs/InertialAtHeavyAtomStartsExample.py
openeye/examples/fastrocs/ShapeDatabaseChunker.py
openeye/examples/fastrocs/ShapeDatabaseClient.py
openeye/examples/fastrocs/ShapeDatabaseClientHistogram.py
openeye/examples/fastrocs/ShapeDatabaseIsLoaded.py
openeye/examples/fastrocs/ShapeDatabaseOEThrowSetLevel.py
openeye/examples/fastrocs/ShapeDatabasePrep.py
openeye/examples/fastrocs/ShapeDatabaseProxy.py
openeye/examples/fastrocs/ShapeDatabaseServer.py
openeye/examples/fastrocs/ShapeDistanceMatrix.py
openeye/examples/fastrocs/SimplePrepScript.py
openeye/examples/fastrocs/SimplePythonScript.py
openeye/examples/fastrocs/SphereExclusionClustering.py
openeye/examples/fastrocs/UserInertialStartsExample.py
openeye/examples/ff/__init__.py
openeye/examples/ff/func1_chk.py
openeye/examples/ff/func2.py
openeye/examples/ff/mmff.py
openeye/examples/ff/mmff_amber.py
openeye/examples/ff/mmff_amber_quat.py
openeye/examples/ff/mmff_complex.py
openeye/examples/ff/mmff_energy.py
openeye/examples/ff/mmff_interactions.py
openeye/examples/ff/mmff_subset.py
openeye/examples/ff/mmff_tor.py
openeye/examples/ff/molfunc1.py
openeye/examples/ff/smir_complex.py
openeye/examples/ff/smirnoff_opt.py
openeye/examples/grapheme/__init__.py
openeye/examples/grapheme/bfactor2img.py
openeye/examples/grapheme/complex2img.py
openeye/examples/grapheme/shapeoverlap2pdf.py
openeye/examples/graphsim/__init__.py
openeye/examples/graphsim/makefastfp.py
openeye/examples/graphsim/searchfastfp.py
openeye/examples/graphsim/searchfp.py
openeye/examples/grid/__init__.py
openeye/examples/grid/gridbabel.py
openeye/examples/iupac/__init__.py
openeye/examples/iupac/mol2nam_example.py
openeye/examples/iupac/nam2mol_example.py
openeye/examples/iupac/translate_example.py
openeye/examples/medchem/BemisMurckoPerception.py
openeye/examples/medchem/ChEMBLsolubility.py
openeye/examples/medchem/CreateMCSFragDatabase.py
openeye/examples/medchem/CreateMMPIndex.py
openeye/examples/medchem/CreateMMPIndexParallel.py
openeye/examples/medchem/CreateMMPIndexThreaded.py
openeye/examples/medchem/MCSFragDatabase.py
openeye/examples/medchem/MCSFragOccurrence.py
openeye/examples/medchem/MatchedPairTransform.py
openeye/examples/medchem/MatchedPairTransformList.py
openeye/examples/medchem/MatchedPairTransformProbe.py
openeye/examples/medchem/OEMedChemInfo.py
openeye/examples/medchem/__init__.py
openeye/examples/molprop/__init__.py
openeye/examples/molprop/molfilter.py
openeye/examples/molprop/molpropcsv.py
openeye/examples/molprop/molpropsddata.py
openeye/examples/molprop/molproptable.py
openeye/examples/molprop/quietfilter.py
openeye/examples/molprop/specificmolprop.py
openeye/examples/oechem/__init__.py
openeye/examples/oechem/anisou.py
openeye/examples/oechem/appendringdict.py
openeye/examples/oechem/cansmi.py
openeye/examples/oechem/catmols.py
openeye/examples/oechem/cliquealign.py
openeye/examples/oechem/convert.py
openeye/examples/oechem/createringdict.py
openeye/examples/oechem/csv2sdf.py
openeye/examples/oechem/dots.py
openeye/examples/oechem/extractringtemplates.py
openeye/examples/oechem/extractscaffold.py
openeye/examples/oechem/generate2D.py
openeye/examples/oechem/gettitles.py
openeye/examples/oechem/libgen.py
openeye/examples/oechem/makefastss.py
openeye/examples/oechem/mcs3dalign.py
openeye/examples/oechem/minpath.py
openeye/examples/oechem/molchunk.py
openeye/examples/oechem/molcount.py
openeye/examples/oechem/molextract.py
openeye/examples/oechem/molgrep.py
openeye/examples/oechem/molsort.py
openeye/examples/oechem/molstats.py
openeye/examples/oechem/oecheminfo.py
openeye/examples/oechem/options.py
openeye/examples/oechem/parts2mols.py
openeye/examples/oechem/printatomnames.py
openeye/examples/oechem/randomizeatoms.py
openeye/examples/oechem/randomsample.py
openeye/examples/oechem/ringsubset.py
openeye/examples/oechem/rmsd.py
openeye/examples/oechem/rotorcount.py
openeye/examples/oechem/sdf2csv.py
openeye/examples/oechem/sdfilter.py
openeye/examples/oechem/sdfmodprops.py
openeye/examples/oechem/sdfrename.py
openeye/examples/oechem/searchfastss.py
openeye/examples/oechem/sizefilter.py
openeye/examples/oechem/smartsalign.py
openeye/examples/oechem/stripsalts.py
openeye/examples/oechem/unimolrxn.py
openeye/examples/oechem/uniqinchi.py
openeye/examples/oechem/uniqmol.py
openeye/examples/omega/__init__.py
openeye/examples/omega/dense_omega.py
openeye/examples/omega/macrocycle.py
openeye/examples/omega/make_fraglib.py
openeye/examples/omega/simple_omega.py
openeye/examples/omega/single_conf_macrocycle.py
openeye/examples/omega/single_conformer.py
openeye/examples/omega/stereo_and_torsion.py
openeye/examples/omega/torsion_drive.py
openeye/examples/quacpac/__init__.py
openeye/examples/quacpac/assigncharges.py
openeye/examples/quacpac/getreasonabletautomers.py
openeye/examples/quacpac/neutralionization.py
openeye/examples/quacpac/setreasonablechargestate.py
openeye/examples/quacpac/wibergbondorders.py
openeye/examples/shape/__init__.py
openeye/examples/shape/besthit.py
openeye/examples/shape/besthitshape.py
openeye/examples/shape/coloroverlap.py
openeye/examples/shape/colorscore.py
openeye/examples/shape/createquery.py
openeye/examples/shape/excludevolume.py
openeye/examples/shape/hermite-expansion.py
openeye/examples/shape/hermite-tanimoto.py
openeye/examples/shape/multicorebestoverlay.py
openeye/examples/shape/nxnshape.py
openeye/examples/shape/overlapcolor.py
openeye/examples/shape/overlapquery.py
openeye/examples/shape/overlayallres.py
openeye/examples/shape/overlaybestres.py
openeye/examples/shape/overlaystruct.py
openeye/examples/shape/rescore.py
openeye/examples/shape/shapeprops.py
openeye/examples/shape/simpleoverlap.py
openeye/examples/shape/tophits.py
openeye/examples/shape/tophitsconf.py
openeye/examples/shape/tophitsquery.py
openeye/examples/shape/usercolor.py
openeye/examples/spicoli/__init__.py
openeye/examples/spicoli/anisotropy.py
openeye/examples/spicoli/bindingsite1.py
openeye/examples/spicoli/bindingsite2.py
openeye/examples/spicoli/cavities.py
openeye/examples/spicoli/complex_cavities.py
openeye/examples/spicoli/overlap.py
openeye/examples/spicoli/patches.py
openeye/examples/spicoli/psa-surf.py
openeye/examples/spicoli/psa.py
openeye/examples/spicoli/voidvolume.py
openeye/examples/spicoli/volume.py
openeye/examples/spruce/extract_biounits_ref.py
openeye/examples/spruce/extract_biounits_remarks.py
openeye/examples/spruce/make_apo_design_units.py
openeye/examples/spruce/make_design_units.py
openeye/examples/spruce/secondarystructuresuperposition.py
openeye/examples/spruce/simplesuperposition.py
openeye/examples/stats/KrigeMW.py
openeye/examples/stats/KrigeMol.py
openeye/examples/szmap/SzmapBestOrientations.py
openeye/examples/szmap/SzmapEnergies.py
openeye/examples/szmap/__init__.py
openeye/examples/szybki/__init__.py
openeye/examples/szybki/bound_entropy.py
openeye/examples/szybki/findsimilarconfs.py
openeye/examples/szybki/flex_residues.py
openeye/examples/szybki/flexible_protein.py
openeye/examples/szybki/freeformconf.py
openeye/examples/szybki/freeformconfadvanced.py
openeye/examples/szybki/freeformconfadvrstr.py
openeye/examples/szybki/freeformconfrstr.py
openeye/examples/szybki/freeformsolv.py
openeye/examples/szybki/ligand_entropy.py
openeye/examples/szybki/ligand_flexprotein_newton.py
openeye/examples/szybki/ligand_multiple_options.py
openeye/examples/szybki/protein_ligand_PB.py
openeye/examples/szybki/protein_multiple_options.py
openeye/examples/szybki/simple_conformer.py
openeye/examples/szybki/simple_newton.py
openeye/examples/szybki/simple_protein.py
openeye/examples/szybki/simple_smirnoff.py
openeye/examples/szybki/simple_vacuum.py
openeye/examples/szybki/solution_entropy.py
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openeye/examples/zap/calc_et.py
openeye/examples/zap/transfer.py
openeye/examples/zap/zap_atompot.py
openeye/examples/zap/zap_focussing.py
openeye/examples/zap/zap_forces.py
openeye/examples/zap/zap_grid1.py
openeye/examples/zap/zap_grid2.py
openeye/examples/zap/zap_grid3.py
openeye/examples/zap/zap_solv1.py
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