CENTIPEDE learns a DNaseI footprint of a transcription factor and predicts its binding sites

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Documentation for package ‘CENTIPEDE’ version 1.2

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CENTIPEDE-package CENTIPEDE a probabilistic model for learning DNaseI footprints and predicting TF binding sites
CENTIPEDE CENTIPEDE a probabilistic model for learning DNaseI footprints and predicting TF binding sites
Centipede CENTIPEDE a probabilistic model for learning DNaseI footprints and predicting TF binding sites
centipede CENTIPEDE a probabilistic model for learning DNaseI footprints and predicting TF binding sites
fitCentipede CENTIPEDE core function
imageCutSites Plots and image with the cleavage pattern
imageCutSitesCombined Plots and image with the cleavage pattern
plotProfile Plots a footprint estimated by Centipede