dbLoadingAttempt | Object to store SCENIC settings |
dbVersion | Object to store SCENIC settings |
defaultDbNames | Default databases by organism |
export2scope | export2scope |
exportsForArboreto | exportsForArboreto (alias: exportsForGRNBoost) |
geneFiltering | geneFiltering |
getDatabases | Object to store SCENIC settings |
getDatabases-method | Object to store SCENIC settings |
getDatasetInfo | Object to store SCENIC settings |
getDatasetInfo-method | Object to store SCENIC settings |
getDbAnnotations | getDbAnnotations |
getDbTfs | getDbTfs |
getIntName | Object to store SCENIC settings |
getIntName-method | Object to store SCENIC settings |
getOutName | Object to store SCENIC settings |
getOutName-method | Object to store SCENIC settings |
getRegulonName | getRegulonName |
getSettings | Object to store SCENIC settings |
getSettings-method | Object to store SCENIC settings |
getTF | getTF |
importArboreto | importArboreto |
importAUCfromText | importAUCfromText |
initializeScenic | Object to store SCENIC settings |
loadFile | Object to store SCENIC settings |
loadFile-method | Object to store SCENIC settings |
loadInt | Object to store SCENIC settings |
loadInt-method | Object to store SCENIC settings |
onlyNonDuplicatedExtended | onlyNonDuplicatedExtended |
plotTsne_AUCellApp | plotTsne_AUCellApp |
plotTsne_AUCellHtml | plotTsne_AUCellHtml |
plotTsne_compareSettings | plotTsne_compareSettings |
plotTsne_rgb | plotTsne_rgb |
regulonsToGeneLists | regulonsToGeneSet |
regulon_plotExpression | regulon_plotExpression |
runCorrelation | runCorrelation |
runGenie3 | runGenie3 |
runSCENIC_1_coexNetwork2modules | runSCENIC_1_coexNetwork2modules |
runSCENIC_2_createRegulons | runSCENIC_2_createRegulons |
runSCENIC_3_scoreCells | runSCENIC_3_scoreCells |
runSCENIC_4_aucell_binarize | runSCENIC_4_aucell_binarize |
ScenicOptions | Object to store SCENIC settings |
ScenicOptions-class | Object to store SCENIC settings |
selectRegulons | selectRegulons |
show | Object to store SCENIC settings |
show-method | Object to store SCENIC settings |
tsneAUC | tsneAUC |
viewMotifs | viewMotifs |