Process and Visualize Lca Files and Taxonomic Profiles
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Documentation for package ‘ngsLCA’ version 0.1.0
Help Pages
| ngsLCA_barplot | Generate Taxa Abundance Barplots |
| ngsLCA_count | Count Reads and Taxa Numbers |
| ngsLCA_deContam | Remove Contamination Taxa |
| ngsLCA_filter | Filter the Combined Taxa Profile |
| ngsLCA_group | Group Taxa in the Combined Taxa Profile |
| ngsLCA_heatmap | Generate Taxa Abundance Heatmaps |
| ngsLCA_meganFile | Generate MEGAN Files |
| ngsLCA_NMDS | Taxa Profiles NMDS |
| ngsLCA_profile | Generate a Combined Taxa Profile |
| ngsLCA_rank | Classify Taxa to Taxonomic Ranks |
| ngsLCA_rarefy | Rarefaction Taxa Reads Abundance |
| ngsLCA_stratplot | Generate Taxa Abundance Stratplots |