| addSNPs |
Combine LDSC and summary statistic output for multivariate GWAS using GenomicSEM |
| commonfactor |
Run common factor model on genetic covariance and sampling covariance matrix |
| commonfactorGWAS |
Estimate SNP effects on a single common factor |
| enrich |
Estimate enrichment of model parameter for a user specified model |
| hdl |
estimate a genetic covariance matrix using High Definition Likelihood (HDL) estimation in R |
| ldsc |
build a convariance structure using LD score regression in R |
| multiSNP |
Combine LDSC, summary statistic output, and LD information for models including multiple SNPs |
| munge |
Clean and munge files to enable LD score regression |
| sumstats |
Allign summary statistics from univariate GWAS for a GWAS in GenomicSEM |
| s_ldsc |
Estimate genetic covariance matrices within functional annotations using multivariable Stratified LD score regression |
| userGWAS |
Create genetic covariance matrices for individual SNPs and estimate SNP effects for a user specified multivariate GWAS |
| usermodel |
Run user specified model on LDSC output |
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