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| cytofTransform | cytofTransform |
| cytofTransform.reverse | cytofTransform.reverse |
| CytoNorm.normalize | normalizeClustered |
| CytoNorm.train | CytoNorm.train |
| emdEvaluation | emdEvaluation |
| getDensities | getDensities |
| getQuantiles | getQuantiles |
| identityFunction | identityFunction |
| named.list | named.list |
| plotDensities | Plot densities per batch |
| PlotOverviewCV | Plot overview of CV values for a flowSOM model |
| plotSplines | Plot splines used by the CytoNorm model |
| prepareFlowSOM | prepareFlowSOM |
| QuantileNorm.normalize | QuantileNorm.normalize |
| QuantileNorm.train | QuantileNorm.train |
| testCV | test_cv |
| textPlot | textPlot |