Methods run, sorted chronologically

>> means before, << means after


Command line suite

(Hover the method name to see the test class name)

TimeDelta (ms)Suite
configuration
Test
configuration
Class
configuration
Groups
configuration
Method
configuration
Test
method
ThreadInstances
19/09/23 14:28:13 0      testChr1 main@1357563986
19/09/23 14:28:13 7      testChrX main@1357563986
19/09/23 14:28:13 7      testHg19Decoy main@1357563986
19/09/23 14:28:13 7      testHg19Gl main@1357563986
19/09/23 14:28:13 7      testRandom main@1357563986
19/09/23 14:28:13 8      testUnplaced main@1357563986
19/09/23 14:28:13 9     >>beforeTest   main@1357563986
19/09/23 14:28:13 9      testBeyondMultipleIndels main@1357563986
19/09/23 14:28:13 11     >>beforeTest   main@1357563986
19/09/23 14:28:13 11      testCompare main@1357563986
19/09/23 14:28:13 12     >>beforeTest   main@1357563986
19/09/23 14:28:13 12      testDeletion main@1357563986
19/09/23 14:28:13 13     >>beforeTest   main@1357563986
19/09/23 14:28:13 13      testExactMatch main@1357563986
19/09/23 14:28:13 13     >>beforeTest   main@1357563986
19/09/23 14:28:13 13      testExtendContig main@1357563986
19/09/23 14:28:13 14     >>beforeTest   main@1357563986
19/09/23 14:28:13 14      testHasNDM main@1357563986
19/09/23 14:28:13 14     >>beforeTest   main@1357563986
19/09/23 14:28:13 14      testInjectSplice main@1357563986
19/09/23 14:28:13 15     >>beforeTest   main@1357563986
19/09/23 14:28:13 15      testInjectSplices main@1357563986
19/09/23 14:28:13 15     >>beforeTest   main@1357563986
19/09/23 14:28:13 15      testInsertion main@1357563986
19/09/23 14:28:13 15     >>beforeTest   main@1357563986
19/09/23 14:28:13 15      testInsertionAtStart main@1357563986
19/09/23 14:28:13 16     >>beforeTest   main@1357563986
19/09/23 14:28:13 16      testInsertionPartialOverlapAtEnd main@1357563986
19/09/23 14:28:13 16     >>beforeTest   main@1357563986
19/09/23 14:28:13 16      testInsertionPartialOverlapAtStart main@1357563986
19/09/23 14:28:13 17     >>beforeTest   main@1357563986
19/09/23 14:28:13 17      testMatchSubset main@1357563986
19/09/23 14:28:13 17     >>beforeTest   main@1357563986
19/09/23 14:28:13 17      testMultipleIndels main@1357563986
19/09/23 14:28:13 17     >>beforeTest   main@1357563986
19/09/23 14:28:13 18      testReadBeyondDeletion main@1357563986
19/09/23 14:28:13 18     >>beforeTest   main@1357563986
19/09/23 14:28:13 19      testReadBeyondInsertion main@1357563986
19/09/23 14:28:13 19     >>beforeTest   main@1357563986
19/09/23 14:28:13 19      testSkipDeletionAtEnd main@1357563986
19/09/23 14:28:13 19     >>beforeTest   main@1357563986
19/09/23 14:28:13 19      testSkipDeletionAtStart main@1357563986
19/09/23 14:28:13 20     >>beforeTest   main@1357563986
19/09/23 14:28:13 20      testSkipDeletionWithinStart main@1357563986
19/09/23 14:28:13 20     >>beforeTest   main@1357563986
19/09/23 14:28:13 20      testSkipInsertionAtEnd main@1357563986
19/09/23 14:28:13 20      testOverlaps main@1357563986
19/09/23 14:28:13 22      testBasic main@1357563986
19/09/23 14:28:13 23      testLeading main@1357563986
19/09/23 14:28:13 23      testNone main@1357563986
19/09/23 14:28:13 23      testTrailing main@1357563986
19/09/23 14:28:13 23      testShiftCigarLeft_basic main@1357563986
19/09/23 14:28:13 26      testShiftCigarLeft_complex main@1357563986
19/09/23 14:28:13 26      testShiftCigarLeft_insertAtTail main@1357563986
19/09/23 14:28:13 27      testShiftCigarLeft_multipleIndels main@1357563986
19/09/23 14:28:13 27      testShiftCigarLeft_softClipping main@1357563986
19/09/23 14:28:13 27      testShiftDelLeft main@1357563986
19/09/23 14:28:13 29      testShiftIndelsLeft main@1357563986
19/09/23 14:28:13 56      testShiftIndelsLeft_LocalRef main@1357563986
19/09/23 14:28:13 57      testCombineJunctions main@1357563986
19/09/23 14:28:13 60      testGetRegionJunctions main@1357563986
19/09/23 14:28:13 63      testLoadJunctionsFromGtf main@1357563986
19/09/23 14:28:13 67      testReadTwoBams main@1357563986
19/09/23 14:28:13 177      testBamParams main@1357563986
19/09/23 14:28:13 215      testNoParams main@1357563986
19/09/23 14:28:13 220     >>setUp   main@1357563986
19/09/23 14:28:13 221      testMapToMultipleContigsSynonymously main@1357563986
19/09/23 14:28:13 226     >>setUp   main@1357563986
19/09/23 14:28:13 226      testMultimapWithinContig main@1357563986
19/09/23 14:28:13 227     >>setUp   main@1357563986
19/09/23 14:28:13 227      testSelectBestAlignment main@1357563986
19/09/23 14:28:13 227     >>setUp   main@1357563986
19/09/23 14:28:13 227      testSingleAlignmentSingleContig main@1357563986
19/09/23 14:28:13 228     >>setUp   main@1357563986
19/09/23 14:28:13 228      testSingleAlignmentSingleContig_noImprovement main@1357563986
19/09/23 14:28:13 228     >>setUp   main@1357563986
19/09/23 14:28:13 228      testSingleAlignmentSingleContig_reverseComplement main@1357563986
19/09/23 14:28:13 229      testCollapseRegions main@1357563986
19/09/23 14:28:13 229      testPairJunctions main@1357563986
19/09/23 14:28:13 235      testPairJunctions_cannotAppearInSameContig main@1357563986
19/09/23 14:28:13 235      testGetRepeatPeriod_HpRun main@1357563986
19/09/23 14:28:13 236      testGetRepeatPeriod_NoRepeat main@1357563986
19/09/23 14:28:13 236      testGetRepeatPeriod_NoRepeat1 main@1357563986
19/09/23 14:28:13 236      testGetRepeatPeriod_Str1 main@1357563986
19/09/23 14:28:13 237      testGetRepeatPeriod_Str2 main@1357563986
19/09/23 14:28:13 237      testGetRepeatPeriod_Str3 main@1357563986
19/09/23 14:28:13 237      testGetRepeatUnit_Homopolymer main@1357563986
19/09/23 14:28:13 237      testGetRepeatUnit_NearHomopolymer1 main@1357563986
19/09/23 14:28:13 237      testGetRepeatUnit_NearHomopolymer2 main@1357563986
19/09/23 14:28:13 238      testGetRepeatUnit_NearHomopolymer3 main@1357563986
19/09/23 14:28:13 238      testGetRepeatUnit_NearStr1 main@1357563986
19/09/23 14:28:13 238      testGetRepeatUnit_SingleNt main@1357563986
19/09/23 14:28:13 238      testGetRepeatUnit_Str1 main@1357563986
19/09/23 14:28:13 238      testGetRepeatUnit_Str2 main@1357563986
19/09/23 14:28:13 239      testGetRepeatUnit_Str3 main@1357563986
19/09/23 14:28:13 239      testGetLeadingClips main@1357563986
19/09/23 14:28:13 239      testGetLeadingClips_empty main@1357563986
19/09/23 14:28:13 239      testGetMappedReadPortion main@1357563986
19/09/23 14:28:13 240      testGetTrailingClips main@1357563986
19/09/23 14:28:13 240      testGetTrailingClips_empty main@1357563986
19/09/23 14:28:13 240      testMergeSequences main@1357563986
19/09/23 14:28:13 241      testMergeSequences_discordantMismatch main@1357563986
19/09/23 14:28:13 241      testMergeSequences_multipleHeadHits main@1357563986
19/09/23 14:28:13 242      testMergeSequences_preferredMismatch main@1357563986
19/09/23 14:28:13 242      testMergeSequences_tooManyMismatches main@1357563986
19/09/23 14:28:13 242      testRemoveSoftClips_withDeletionAndSoftClipAtEnd main@1357563986
19/09/23 14:28:13 242      testRemoveSoftClips_withDeletionAndSoftClipAtStart main@1357563986
19/09/23 14:28:13 242      testSubsetCigar_deletion main@1357563986
19/09/23 14:28:13 243      testSubsetCigar_exact main@1357563986
19/09/23 14:28:13 243      testSubsetCigar_lessThan1Elem main@1357563986
19/09/23 14:28:13 243      testSubsetCigar_lessThan1Elem2 main@1357563986
19/09/23 14:28:13 243      testSubsetCigar_lessThan1Elem3 main@1357563986
19/09/23 14:28:13 244      testSubsetCigar_lessThanFirstElem main@1357563986
19/09/23 14:28:13 244      testSubsetCigar_long main@1357563986
19/09/23 14:28:13 244      testSubsetCigar_skipAndSpan1 main@1357563986
19/09/23 14:28:13 245      testSubsetCigar_skipAndSpan2 main@1357563986
19/09/23 14:28:13 245      testSubsetCigar_skipElem main@1357563986
19/09/23 14:28:13 245      testSubsetCigar_skipElem2 main@1357563986
19/09/23 14:28:13 245      testSubsetCigar_spanAll1 main@1357563986
19/09/23 14:28:13 245      testSubsetCigar_spanAll2 main@1357563986
19/09/23 14:28:13 246      testSubsetCigar_spanAll3 main@1357563986
19/09/23 14:28:13 246      testSubsetCigar_spanAll4 main@1357563986
19/09/23 14:28:13 246      testSubsetCigar_spanElems1 main@1357563986
19/09/23 14:28:13 246      testSubsetCigar_spanElems2 main@1357563986
19/09/23 14:28:13 246      testSubsetCigar_spanElems3 main@1357563986
19/09/23 14:28:13 247      testConvertAndFilter main@1357563986
19/09/23 14:28:13 248      testBigDel main@1357563986
19/09/23 14:28:13 255      testDelete main@1357563986
19/09/23 14:28:13 255      testEndToEnd main@1357563986
19/09/23 14:28:13 256      testExactMatch main@1357563986
19/09/23 14:28:13 256      testInsert main@1357563986
19/09/23 14:28:13 256      testInsert2 main@1357563986
19/09/23 14:28:13 259      testLeadingInsert main@1357563986
19/09/23 14:28:13 260      testMismatches main@1357563986
19/09/23 14:28:13 260      testTrailingInsert main@1357563986
19/09/23 14:28:13 261      testUnderflowBug main@1357563986
19/09/23 14:28:13 361      testMapAmbiguousMatch main@1357563986
19/09/23 14:28:13 362      testMapAmbiguousMatchWithMismatches main@1357563986
19/09/23 14:28:13 362      testMapExact main@1357563986
19/09/23 14:28:13 363      testMapFiveMismatches main@1357563986
19/09/23 14:28:13 363      testMapNoSeedMatch main@1357563986
19/09/23 14:28:13 364      testMapOneMismatch main@1357563986
19/09/23 14:28:13 364      testMapSixMismatches main@1357563986
19/09/23 14:28:13 365      testMapSixMismatchesIncreasedMismatchRate main@1357563986
19/09/23 14:28:13 365      testReverseComplement2Mismatches main@1357563986
19/09/23 14:28:13 366      testReverseComplementExact main@1357563986
19/09/23 14:28:13 366      testShortAmbiguousMatch main@1357563986
19/09/23 14:28:13 366      testSimple1Mismatch main@1357563986