Tests passed/Failed/Skipped: | 122/0/0 |
Started on: | Mon Sep 23 14:28:13 CEST 2019 |
Total time: | 0 seconds (378 ms) |
Included groups: | |
Excluded groups: |
PASSED TESTS | |||
Test method | Exception | Time (seconds) | Instance |
testBamParams Test class: abra.ReAlignerOptionsTest |
0 | abra.ReAlignerOptionsTest@470f1802 | |
testBasic Test class: abra.cadabra.HomopolymerRunTest |
0 | abra.cadabra.HomopolymerRunTest@418e7838 | |
testBeyondMultipleIndels Test class: abra.CigarUtilsTest |
0 | abra.CigarUtilsTest@76908cc0 | |
testBigDel Test class: abra.SemiGlobalAlignerTest |
0 | abra.SemiGlobalAlignerTest@3e2e18f2 | |
testChr1 Test class: abra.ChromosomeRegexTest |
0 | abra.ChromosomeRegexTest@3c419631 | |
testChrX Test class: abra.ChromosomeRegexTest |
0 | abra.ChromosomeRegexTest@3c419631 | |
testCollapseRegions Test class: abra.RealignerTest |
0 | abra.RealignerTest@460d0a57 | |
testCombineJunctions Test class: abra.JunctionUtilsTest |
0 | abra.JunctionUtilsTest@cd3fee8 | |
testCompare Test class: abra.CigarUtilsTest |
0 | abra.CigarUtilsTest@76908cc0 | |
testConvertAndFilter Test class: abra.ScoredContigTest |
0 | abra.ScoredContigTest@6ef888f6 | |
testDelete Test class: abra.SemiGlobalAlignerTest |
0 | abra.SemiGlobalAlignerTest@3e2e18f2 | |
testDeletion Test class: abra.CigarUtilsTest |
0 | abra.CigarUtilsTest@76908cc0 | |
testEndToEnd Test class: abra.SemiGlobalAlignerTest |
0 | abra.SemiGlobalAlignerTest@3e2e18f2 | |
testExactMatch Test class: abra.CigarUtilsTest |
0 | abra.CigarUtilsTest@76908cc0 | |
testExactMatch Test class: abra.SemiGlobalAlignerTest |
0 | abra.SemiGlobalAlignerTest@3e2e18f2 | |
testExtendContig Test class: abra.CigarUtilsTest |
0 | abra.CigarUtilsTest@76908cc0 | |
testGetLeadingClips Test class: abra.SAMRecordUtilsTest |
0 | abra.SAMRecordUtilsTest@22a637e7 | |
testGetLeadingClips_empty Test class: abra.SAMRecordUtilsTest |
0 | abra.SAMRecordUtilsTest@22a637e7 | |
testGetMappedReadPortion Test class: abra.SAMRecordUtilsTest |
0 | abra.SAMRecordUtilsTest@22a637e7 | |
testGetRegionJunctions Test class: abra.JunctionUtilsTest |
0 | abra.JunctionUtilsTest@cd3fee8 | |
testGetRepeatPeriod_HpRun Test class: abra.cadabra.RepeatUtilsTest |
0 | abra.cadabra.RepeatUtilsTest@10e92f8f | |
testGetRepeatPeriod_NoRepeat Test class: abra.cadabra.RepeatUtilsTest |
0 | abra.cadabra.RepeatUtilsTest@10e92f8f | |
testGetRepeatPeriod_NoRepeat1 Test class: abra.cadabra.RepeatUtilsTest |
0 | abra.cadabra.RepeatUtilsTest@10e92f8f | |
testGetRepeatPeriod_Str1 Test class: abra.cadabra.RepeatUtilsTest |
0 | abra.cadabra.RepeatUtilsTest@10e92f8f | |
testGetRepeatPeriod_Str2 Test class: abra.cadabra.RepeatUtilsTest |
0 | abra.cadabra.RepeatUtilsTest@10e92f8f | |
testGetRepeatPeriod_Str3 Test class: abra.cadabra.RepeatUtilsTest |
0 | abra.cadabra.RepeatUtilsTest@10e92f8f | |
testGetRepeatUnit_Homopolymer Test class: abra.cadabra.RepeatUtilsTest |
0 | abra.cadabra.RepeatUtilsTest@10e92f8f | |
testGetRepeatUnit_NearHomopolymer1 Test class: abra.cadabra.RepeatUtilsTest |
0 | abra.cadabra.RepeatUtilsTest@10e92f8f | |
testGetRepeatUnit_NearHomopolymer2 Test class: abra.cadabra.RepeatUtilsTest |
0 | abra.cadabra.RepeatUtilsTest@10e92f8f | |
testGetRepeatUnit_NearHomopolymer3 Test class: abra.cadabra.RepeatUtilsTest |
0 | abra.cadabra.RepeatUtilsTest@10e92f8f | |
testGetRepeatUnit_NearStr1 Test class: abra.cadabra.RepeatUtilsTest |
0 | abra.cadabra.RepeatUtilsTest@10e92f8f | |
testGetRepeatUnit_SingleNt Test class: abra.cadabra.RepeatUtilsTest |
0 | abra.cadabra.RepeatUtilsTest@10e92f8f | |
testGetRepeatUnit_Str1 Test class: abra.cadabra.RepeatUtilsTest |
0 | abra.cadabra.RepeatUtilsTest@10e92f8f | |
testGetRepeatUnit_Str2 Test class: abra.cadabra.RepeatUtilsTest |
0 | abra.cadabra.RepeatUtilsTest@10e92f8f | |
testGetRepeatUnit_Str3 Test class: abra.cadabra.RepeatUtilsTest |
0 | abra.cadabra.RepeatUtilsTest@10e92f8f | |
testGetTrailingClips Test class: abra.SAMRecordUtilsTest |
0 | abra.SAMRecordUtilsTest@22a637e7 | |
testGetTrailingClips_empty Test class: abra.SAMRecordUtilsTest |
0 | abra.SAMRecordUtilsTest@22a637e7 | |
testHasNDM Test class: abra.CigarUtilsTest |
0 | abra.CigarUtilsTest@76908cc0 | |
testHg19Decoy Test class: abra.ChromosomeRegexTest |
0 | abra.ChromosomeRegexTest@3c419631 | |
testHg19Gl Test class: abra.ChromosomeRegexTest |
0 | abra.ChromosomeRegexTest@3c419631 | |
testInjectSplice Test class: abra.CigarUtilsTest |
0 | abra.CigarUtilsTest@76908cc0 | |
testInjectSplices Test class: abra.CigarUtilsTest |
0 | abra.CigarUtilsTest@76908cc0 | |
testInsert Test class: abra.SemiGlobalAlignerTest |
0 | abra.SemiGlobalAlignerTest@3e2e18f2 | |
testInsert2 Test class: abra.SemiGlobalAlignerTest |
0 | abra.SemiGlobalAlignerTest@3e2e18f2 | |
testInsertion Test class: abra.CigarUtilsTest |
0 | abra.CigarUtilsTest@76908cc0 | |
testInsertionAtStart Test class: abra.CigarUtilsTest |
0 | abra.CigarUtilsTest@76908cc0 | |
testInsertionPartialOverlapAtEnd Test class: abra.CigarUtilsTest |
0 | abra.CigarUtilsTest@76908cc0 | |
testInsertionPartialOverlapAtStart Test class: abra.CigarUtilsTest |
0 | abra.CigarUtilsTest@76908cc0 | |
testLeading Test class: abra.cadabra.HomopolymerRunTest |
0 | abra.cadabra.HomopolymerRunTest@418e7838 | |
testLeadingInsert Test class: abra.SemiGlobalAlignerTest |
0 | abra.SemiGlobalAlignerTest@3e2e18f2 | |
testLoadJunctionsFromGtf Test class: abra.JunctionUtilsTest |
0 | abra.JunctionUtilsTest@cd3fee8 | |
testMapAmbiguousMatch Test class: abra.SimpleMapperTest |
0 | abra.SimpleMapperTest@3c130745 | |
testMapAmbiguousMatchWithMismatches Test class: abra.SimpleMapperTest |
0 | abra.SimpleMapperTest@3c130745 | |
testMapExact Test class: abra.SimpleMapperTest |
0 | abra.SimpleMapperTest@3c130745 | |
testMapFiveMismatches Test class: abra.SimpleMapperTest |
0 | abra.SimpleMapperTest@3c130745 | |
testMapNoSeedMatch Test class: abra.SimpleMapperTest |
0 | abra.SimpleMapperTest@3c130745 | |
testMapOneMismatch Test class: abra.SimpleMapperTest |
0 | abra.SimpleMapperTest@3c130745 | |
testMapSixMismatches Test class: abra.SimpleMapperTest |
0 | abra.SimpleMapperTest@3c130745 | |
testMapSixMismatchesIncreasedMismatchRate Test class: abra.SimpleMapperTest |
0 | abra.SimpleMapperTest@3c130745 | |
testMapToMultipleContigsSynonymously Test class: abra.ReadEvaluatorTest |
0 | abra.ReadEvaluatorTest@4a22f9e2 | |
testMatchSubset Test class: abra.CigarUtilsTest |
0 | abra.CigarUtilsTest@76908cc0 | |
testMergeSequences Test class: abra.SAMRecordUtilsTest |
0 | abra.SAMRecordUtilsTest@22a637e7 | |
testMergeSequences_discordantMismatch Test class: abra.SAMRecordUtilsTest |
0 | abra.SAMRecordUtilsTest@22a637e7 | |
testMergeSequences_multipleHeadHits Test class: abra.SAMRecordUtilsTest |
0 | abra.SAMRecordUtilsTest@22a637e7 | |
testMergeSequences_preferredMismatch Test class: abra.SAMRecordUtilsTest |
0 | abra.SAMRecordUtilsTest@22a637e7 | |
testMergeSequences_tooManyMismatches Test class: abra.SAMRecordUtilsTest |
0 | abra.SAMRecordUtilsTest@22a637e7 | |
testMismatches Test class: abra.SemiGlobalAlignerTest |
0 | abra.SemiGlobalAlignerTest@3e2e18f2 | |
testMultimapWithinContig Test class: abra.ReadEvaluatorTest |
0 | abra.ReadEvaluatorTest@4a22f9e2 | |
testMultipleIndels Test class: abra.CigarUtilsTest |
0 | abra.CigarUtilsTest@76908cc0 | |
testNoParams Test class: abra.ReAlignerOptionsTest |
0 | abra.ReAlignerOptionsTest@470f1802 | |
testNone Test class: abra.cadabra.HomopolymerRunTest |
0 | abra.cadabra.HomopolymerRunTest@418e7838 | |
testOverlaps Test class: abra.FeatureTest |
0 | abra.FeatureTest@3d680b5a | |
testPairJunctions Test class: abra.RealignerTest |
0 | abra.RealignerTest@460d0a57 | |
testPairJunctions_cannotAppearInSameContig Test class: abra.RealignerTest |
0 | abra.RealignerTest@460d0a57 | |
testRandom Test class: abra.ChromosomeRegexTest |
0 | abra.ChromosomeRegexTest@3c419631 | |
testReadBeyondDeletion Test class: abra.CigarUtilsTest |
0 | abra.CigarUtilsTest@76908cc0 | |
testReadBeyondInsertion Test class: abra.CigarUtilsTest |
0 | abra.CigarUtilsTest@76908cc0 | |
testReadTwoBams Test class: abra.MultiSamReaderTest |
0 | abra.MultiSamReaderTest@4b5d6a01 | |
testRemoveSoftClips_withDeletionAndSoftClipAtEnd Test class: abra.SAMRecordUtilsTest |
0 | abra.SAMRecordUtilsTest@22a637e7 | |
testRemoveSoftClips_withDeletionAndSoftClipAtStart Test class: abra.SAMRecordUtilsTest |
0 | abra.SAMRecordUtilsTest@22a637e7 | |
testReverseComplement2Mismatches Test class: abra.SimpleMapperTest |
0 | abra.SimpleMapperTest@3c130745 | |
testReverseComplementExact Test class: abra.SimpleMapperTest |
0 | abra.SimpleMapperTest@3c130745 | |
testSelectBestAlignment Test class: abra.ReadEvaluatorTest |
0 | abra.ReadEvaluatorTest@4a22f9e2 | |
testShiftCigarLeft_basic Test class: abra.IndelShifterTest |
0 | abra.IndelShifterTest@61230f6a | |
testShiftCigarLeft_complex Test class: abra.IndelShifterTest |
0 | abra.IndelShifterTest@61230f6a | |
testShiftCigarLeft_insertAtTail Test class: abra.IndelShifterTest |
0 | abra.IndelShifterTest@61230f6a | |
testShiftCigarLeft_multipleIndels Test class: abra.IndelShifterTest |
0 | abra.IndelShifterTest@61230f6a | |
testShiftCigarLeft_softClipping Test class: abra.IndelShifterTest |
0 | abra.IndelShifterTest@61230f6a | |
testShiftDelLeft Test class: abra.IndelShifterTest |
0 | abra.IndelShifterTest@61230f6a | |
testShiftIndelsLeft Test class: abra.IndelShifterTest |
0 | abra.IndelShifterTest@61230f6a | |
testShiftIndelsLeft_LocalRef Test class: abra.IndelShifterTest |
0 | abra.IndelShifterTest@61230f6a | |
testShortAmbiguousMatch Test class: abra.SimpleMapperTest |
0 | abra.SimpleMapperTest@3c130745 | |
testSimple1Mismatch Test class: abra.SimpleMapperTest |
0 | abra.SimpleMapperTest@3c130745 | |
testSingleAlignmentSingleContig Test class: abra.ReadEvaluatorTest |
0 | abra.ReadEvaluatorTest@4a22f9e2 | |
testSingleAlignmentSingleContig_noImprovement Test class: abra.ReadEvaluatorTest |
0 | abra.ReadEvaluatorTest@4a22f9e2 | |
testSingleAlignmentSingleContig_reverseComplement Test class: abra.ReadEvaluatorTest |
0 | abra.ReadEvaluatorTest@4a22f9e2 | |
testSkipDeletionAtEnd Test class: abra.CigarUtilsTest |
0 | abra.CigarUtilsTest@76908cc0 | |
testSkipDeletionAtStart Test class: abra.CigarUtilsTest |
0 | abra.CigarUtilsTest@76908cc0 | |
testSkipDeletionWithinStart Test class: abra.CigarUtilsTest |
0 | abra.CigarUtilsTest@76908cc0 | |
testSkipInsertionAtEnd Test class: abra.CigarUtilsTest |
0 | abra.CigarUtilsTest@76908cc0 | |
testSubsetCigar_deletion Test class: abra.SAMRecordUtilsTest |
0 | abra.SAMRecordUtilsTest@22a637e7 | |
testSubsetCigar_exact Test class: abra.SAMRecordUtilsTest |
0 | abra.SAMRecordUtilsTest@22a637e7 | |
testSubsetCigar_lessThan1Elem Test class: abra.SAMRecordUtilsTest |
0 | abra.SAMRecordUtilsTest@22a637e7 | |
testSubsetCigar_lessThan1Elem2 Test class: abra.SAMRecordUtilsTest |
0 | abra.SAMRecordUtilsTest@22a637e7 | |
testSubsetCigar_lessThan1Elem3 Test class: abra.SAMRecordUtilsTest |
0 | abra.SAMRecordUtilsTest@22a637e7 | |
testSubsetCigar_lessThanFirstElem Test class: abra.SAMRecordUtilsTest |
0 | abra.SAMRecordUtilsTest@22a637e7 | |
testSubsetCigar_long Test class: abra.SAMRecordUtilsTest |
0 | abra.SAMRecordUtilsTest@22a637e7 | |
testSubsetCigar_skipAndSpan1 Test class: abra.SAMRecordUtilsTest |
0 | abra.SAMRecordUtilsTest@22a637e7 | |
testSubsetCigar_skipAndSpan2 Test class: abra.SAMRecordUtilsTest |
0 | abra.SAMRecordUtilsTest@22a637e7 | |
testSubsetCigar_skipElem Test class: abra.SAMRecordUtilsTest |
0 | abra.SAMRecordUtilsTest@22a637e7 | |
testSubsetCigar_skipElem2 Test class: abra.SAMRecordUtilsTest |
0 | abra.SAMRecordUtilsTest@22a637e7 | |
testSubsetCigar_spanAll1 Test class: abra.SAMRecordUtilsTest |
0 | abra.SAMRecordUtilsTest@22a637e7 | |
testSubsetCigar_spanAll2 Test class: abra.SAMRecordUtilsTest |
0 | abra.SAMRecordUtilsTest@22a637e7 | |
testSubsetCigar_spanAll3 Test class: abra.SAMRecordUtilsTest |
0 | abra.SAMRecordUtilsTest@22a637e7 | |
testSubsetCigar_spanAll4 Test class: abra.SAMRecordUtilsTest |
0 | abra.SAMRecordUtilsTest@22a637e7 | |
testSubsetCigar_spanElems1 Test class: abra.SAMRecordUtilsTest |
0 | abra.SAMRecordUtilsTest@22a637e7 | |
testSubsetCigar_spanElems2 Test class: abra.SAMRecordUtilsTest |
0 | abra.SAMRecordUtilsTest@22a637e7 | |
testSubsetCigar_spanElems3 Test class: abra.SAMRecordUtilsTest |
0 | abra.SAMRecordUtilsTest@22a637e7 | |
testTrailing Test class: abra.cadabra.HomopolymerRunTest |
0 | abra.cadabra.HomopolymerRunTest@418e7838 | |
testTrailingInsert Test class: abra.SemiGlobalAlignerTest |
0 | abra.SemiGlobalAlignerTest@3e2e18f2 | |
testUnderflowBug Test class: abra.SemiGlobalAlignerTest |
0 | abra.SemiGlobalAlignerTest@3e2e18f2 | |
testUnplaced Test class: abra.ChromosomeRegexTest |
0 | abra.ChromosomeRegexTest@3c419631 |