R: List Gene Sets

listGeneSet {WebGestaltR}

R Documentation

List Gene Sets

List available gene sets for the given organism on WebGestalt server.

listGeneSet(
  organism = "hsapiens",
  hostName = "http://www.webgestalt.org/",
  cache = NULL
)

`organism`	Currently, WebGestaltR supports 12 organisms. Users can use the function `listOrganism` to check available organisms. Users can also input `others` to perform the enrichment analysis for other organisms not supported by WebGestaltR. For other organisms, users need to provide the functional categories, interesting list and reference list (for ORA method). Because WebGestaltR does not perform the ID mapping for the other organisms, the above data should have the same ID type.
`hostName`	The server URL for accessing data. Mostly for development purposes.
`cache`	A directory to save data cache for reuse. Defaults to `NULL` and disabled.

A data frame of available gene sets.

[Package WebGestaltR version 0.4.4 Index]