R: Affinity Propagation

affinityPropagation {WebGestaltR} | R Documentation

## Affinity Propagation

### Description

Use affinity propagation to cluster similar gene sets to reduce redundancy in report.

### Usage

    affinityPropagation(idsInSet, score)

### Arguments

`idsInSet` | A list of set names and their member IDs.
`score` | A vector of addible scores with the same length used to assign input preference; higher score has larger weight, i.e. -logP.

### Value

A list of `clusters` and `representatives` for each cluster.

clusters

  A list of character vectors of set IDs in each cluster.

representatives

  A character vector of representatives for each cluster.

### Author(s)

Zhiao Shi, Yuxing Liao

[Package WebGestaltR version 0.4.3 Index]