R: Data on HIV integration sites from several studies

integrations {vipor} | R Documentation

## Data on HIV integration sites from several studies

### Description

A dataset containing data from a meta-analysis looking for differences between active and inactive HIV integrations. Each row represents a provirus integrated somewhere in a human chromosome with whether viral expression was detectd, the distance to the nearest gene and the number of reads from H4K12ac ChIP-Seq mapped to within 50,000 bases of the integration.

### Usage

    integrations

### Format

A data frame with 12436 rows and 4 variables:

study

  the cell population infected by HIV

latent

  whether the provirus was active (expressed) or inactive (latent)

nearestGene

  distance to nearest gene (transcription unit) (0 if in a gene)

H4K12ac

  number of reads aligned within +- 50,000 bases in a H4K12ac ChIP-Seq

### Source

http://www.retrovirology.com/content/10/1/90/additional, system.file("data-raw", "makeIntegrations.R", package = "vipor")

### References

http://www.retrovirology.com/content/10/1/90

[Package vipor version 0.4.5 Index]