R: Defunct Functions in Package 'vegan'

vegan-defunct {vegan} | R Documentation

## Defunct Functions in Package vegan

### Description

The functions or variables listed here are no longer part of vegan as they are no longer needed.

### Usage

    ## S3 method for class 'adonis'
    density(x, ...)
    ## S3 method for class 'vegandensity'
    plot(x, main = NULL, xlab = NULL, ylab = "Density",
       type = "l", zero.line = TRUE, obs.line = TRUE, ...)
    ## S3 method for class 'adonis'
    densityplot(x, data, xlab = "Null", ...)

### Details

The deprecated `density` and `densityplot` methods are replaced with similar methods for `permustats`. The `permustats` offers more powerful analysis tools for permutations, including `summary.permustats` giving z values (a.k.a. standardized effect sizes, SES), and Q-Q plots (`qqnorm.permustats`, `qqmath.permustats`.

### See Also

`Defunct`, `vegan-deprecated`

[Package vegan version 2.4-3 Index]