R: Compute the penalty weight for the MPLE penalized likelihood...

computeMPLElambda {unmarked} | R Documentation

## Compute the penalty weight for the MPLE penalized likelihood method

### Description

This function computes the weight for the MPLE penalty of Moreno & Lele (2010).

### Usage

    computeMPLElambda(formula, data, knownOcc=numeric(0), starts,
    method="BFGS",engine=c("C", "R"))

### Arguments

`formula` | Double right-hand side formula describing covariates of detection and occupancy in that order.
`data` | An `unmarkedFrameOccu` object
`knownOcc` | Vector of sites that are known to be occupied. These should be supplied as row numbers of the y matrix, eg, c(3,8) if sites 3 and 8 were known to be occupied a priori.
`starts` | Vector of parameter starting values.
`method` | Optimization method used by `optim`.
`engine` | Either "C" or "R" to use fast C++ code or native R code during the optimization.

### Details

See `occuPEN` for details and examples.

### Value

The computed lambda.

### Author(s)

Rebecca A. Hutchinson

### References

Moreno, M. and S. R. Lele. 2010. Improved estimation of site occupancy using penalized likelihood. Ecology 91: 341-346.

### See Also

`unmarked`, `unmarkedFrameOccu`, `occu`, `occuPEN`, `occuPEN_CV`, `nonparboot`

[Package unmarked version 1.0.0 Index]