R: Convert between matrices and 'phyDat' objects

MatrixToPhyDat {TreeTools}

R Documentation

Convert between matrices and `phyDat` objects

MatrixToPhyDat() converts a matrix of tokens to a phyDat object; PhyDatToMatrix() converts a phyDat object to a matrix of tokens.

MatrixToPhyDat(tokens)

PhyDatToMatrix(dataset)

`tokens`	matrix of tokens, probably created with `ReadCharacters()` or `ReadTntCharacters()`. Row names should correspond to tip labels; column names may optionally correspond to character labels.
`dataset`	A dataset of class `phyDat`.

MatrixToPhyDat() returns an object of class phyDat.

PhyDatToMatrix() returns a matrix corresponding to the uncompressed character states within a phyDat object.