## ----text-entry, fig.align='center', fig.width=6, out.width='75%'-------------
myTree <- ape::read.tree(text='((A, B), ((C, D), (E, F)));')
plot(myTree)

## ----double-bracket, fig.align='center', fig.width=6, out.width='75%'---------
badTree <- ape::read.tree(text='((A, B), (((C, D), ((E), F))));')
plot(badTree)
ape::nodelabels(bg=c(3,3,2,2,3,3,2))

## ----branch-lengths, fig.align='center', fig.width=6, out.width='75%'---------
myTree <- ape::read.tree(text='((A:1, B:1):2, ((C:1, D:1):2, (E:1, F:1):2):4);')
plot(myTree)

