getOtgrp {treeman}R Documentation

Get outgroup

Description

Return the outgroup based on a tree and a vector of IDs.

Usage

getOtgrp(tree, ids)

Arguments

tree

TreeMan object

ids

vector of node ids

Details

Returns a id, character. If there are multiple possible outgroups, returns NULL.

See Also

https://github.com/DomBennett/treeman/wiki/get-methods

Examples

library(treeman)
data(mammals)
# orangutan is an outgroup wrt humans and chimps
getOtgrp(mammals, ids=c('Homo_sapiens', 'Pan_troglodytes', 'Pongo_pygmaeus'))
[Package treeman version 1.1.3 Index]