R: Example human immune repertoire data

AIRRDb {tigger} | R Documentation

## Example human immune repertoire data

### Description

A `data.frame` of example V(D)J immunoglobulin sequences derived from a single individual (PGP1), sequenced on the Roche 454 platform, and assigned by IMGT/HighV-QUEST to IGHV1 family alleles.

### Format

A `data.frame` where rows correspond to unique V(D)J sequences and columns include:

- `"sequence_alignment"`: IMGT-gapped V(D)J nucleotide sequence.

- `"v_call"`: IMGT/HighV-QUEST V segment allele calls.

- `"d_call"`: IMGT/HighV-QUEST D segment allele calls.

- `"j_call"`: IMGT/HighV-QUEST J segment allele calls.

- `"junction_length"`: Junction region length.

### References

1. Gadala-Maria, et al. (2015) Automated analysis of high-throughput B cell sequencing data reveals a high frequency of novel immunoglobulin V gene segment alleles. PNAS. 112(8):E862-70.

### See Also

See SampleDb for Change-O formatted version of `AIRRDb`.

[Package tigger version 1.0.0 Index]