R: Clean up nucleotide sequences

cleanSeqs {tigger} | R Documentation

## Clean up nucleotide sequences

### Description

`cleanSeqs` capitalizes nucleotides and replaces all characters besides `c("A", "C", "G", "T", "-", ".")` with `"N"`.

### Usage

    cleanSeqs(seqs)

### Arguments

`seqs` | vector of nucleotide sequences.

### Value

A modified vector of nucleotide sequences.

### See Also

sortAlleles and updateAlleleNames can help format a list of allele names.

### Examples

    # Clean messy nucleotide sequences
    seqs <- c("AGAT.taa-GAG...ATA", "GATACAGTXXZZAGNNPPACA")
    cleanSeqs(seqs)

[Package tigger version 1.0.0 Index]