Defunct functions in taxize

Description

The following functions are now defunct (no longer available):

Details

• col_classification: See classification

• eol_hierarchy: See classification

• tp_classification: See classification

• tpl_search: Use the Taxonstand functions TPL or TPLck directly.

• get_seqs: This function changed name to ncbi_getbyname.

• get_genes: This function changed name to ncbi_getbyid.

• get_genes_avail: This function changed name to ncbi_search.

• ncbi_getbyname: See ncbi_byname in the traits package.

• ncbi_getbyid: See ncbi_byid in the traits package.

• ncbi_search: See ncbi_searcher in the traits package.

• eol_invasive: See eol in the originr package.

• gisd_isinvasive: See gisd in the originr package.

• ubio_classification: The uBio web services was down for quite a while, is now (as of 2016-05-09) back up, but we don't trust that it will stay up and available.

• ubio_classification_search: The uBio web services was down for quite a while, is now (as of 2016-05-09) back up, but we don't trust that it will stay up and available.

• ubio_id: The uBio web services was down for quite a while, is now (as of 2016-05-09) back up, but we don't trust that it will stay up and available.

• ubio_ping: The uBio web services was down for quite a while, is now (as of 2016-05-09) back up, but we don't trust that it will stay up and available.

• ubio_search: The uBio web services was down for quite a while, is now (as of 2016-05-09) back up, but we don't trust that it will stay up and available.

• ubio_synonyms: The uBio web services was down for quite a while, is now (as of 2016-05-09) back up, but we don't trust that it will stay up and available.

• get_ubioid: The uBio web services are apparently down indefinitely.

• phylomatic_tree: This function is defunct. See phylomatic in the package brranching

• phylomatic_format: This function is defunct. See phylomatic_names in the package brranching