| get_id_details {taxize} | R Documentation |
get_*() functionsIncluding outputs from get_*() functions, as well as
their attributes, and all exception behaviors.
This document applies to the following functions:
Each output from get_*() functions have the following attributes:
match (character) - the reason for NA, either 'not found',
'found' or if ask = FALSE then 'NA due to ask=FALSE')
multiple_matches (logical) - Whether multiple matches were
returned by the data source. This can be TRUE, even if you get 1
name back because we try to pattern match the name to see if there's any
direct matches. So sometimes this attribute is TRUE, as well as
pattern_match, which then returns 1 resulting name without user
prompt.
pattern_match (logical) - Whether a pattern match was made.
If TRUE then multiple_matches must be TRUE, and we
found a perfect match to your name, ignoring case. If FALSE,
there wasn't a direct match, and likely you need to pick from many choices
or further parameters can be used to limit results
uri (character) - The URI where more information can be
read on the taxon - includes the taxonomic identifier in the URL somewhere.
This may be missing if the value returned is NA
The following are the various ways in which get_*() functions
behave:
success - the value returned is a character string or numeric
no matches found - you'll get an NA, refine your search or possible the taxon searched for does not exist in the database you're using
more than on match and ask = FALSE - if there's more than one
matching result, and you have set ask = FALSE, then we can't
determine the single match to return, so we give back NA.
However, in this case we do set the match attribute to say
NA due to ask=FALSE & > 1 result so it's very clear what
happened - and you can even programatically check this as well
NA due to some other reason - some get_*() functions
have additional parameters for filtering taxa. It's possible that even
though there's results (that is, found will say TRUE),
you can get back an NA. This is most likely if the parameter filters
taxa after they are returned from the data provider and the value passed
to the parameter leads to no matches.