R: Defunct functions in taxize

taxize-defunct {taxize} | R Documentation

## Defunct functions in taxize

### Description

The following functions are now defunct (no longer available):

### Details

- `col_classification`: See `classification`

- `eol_hierarchy`: See `classification`

- `tp_classification`: See `classification`

- `tpl_search`: Use the Taxonstand functions `TPL` or `TPLck` directly.

- `get_seqs`: This function changed name to `ncbi_getbyname`.

- `get_genes`: This function changed name to `ncbi_getbyid`.

- `get_genes_avail`: This function changed name to `ncbi_search`.

- `ncbi_getbyname`: See `ncbi_byname` in the traits package.

- `ncbi_getbyid`: See `ncbi_byid` in the traits package.

- `ncbi_search`: See `ncbi_searcher` in the traits package.

- `eol_invasive`: See `eol` in the originr package.

- `gisd_isinvasive`: See `gisd` in the originr package.

- `ubio_classification`: The uBio web services was down for quite a while, is now (as of 2016-05-09) back up, but we don't trust that it will stay up and available.

- `ubio_classification_search`: The uBio web services was down for quite a while, is now (as of 2016-05-09) back up, but we don't trust that it will stay up and available.

- `ubio_id`: The uBio web services was down for quite a while, is now (as of 2016-05-09) back up, but we don't trust that it will stay up and available.

- `ubio_ping`: The uBio web services was down for quite a while, is now (as of 2016-05-09) back up, but we don't trust that it will stay up and available.

- `ubio_search`: The uBio web services was down for quite a while, is now (as of 2016-05-09) back up, but we don't trust that it will stay up and available.

- `ubio_synonyms`: The uBio web services was down for quite a while, is now (as of 2016-05-09) back up, but we don't trust that it will stay up and available.

- `get_ubioid`: The uBio web services are apparently down indefinitely.

- `phylomatic_tree`: This function is defunct. See `phylomatic` in the package brranching

- `phylomatic_format`: This function is defunct. See `phylomatic_names` in the package brranching

[Package taxize version 0.9.0 Index]