R: Analysis of Functional and Phylogenetic Patterns in Metacommunities

# Analysis of Functional and Phylogenetic Patterns in Metacommunities

## Documentation for package ‘SYNCSA’ version 1.3.4

- DESCRIPTION file.

## Help Pages

ADRS | Artificial Data for Run SYNCSA
belonging | Degree of belonging of species
cent.norm | Matrix centralization and standardization
CollectNames | Collect names an entire list
cor.mantel | Function to obtain the correlation between two matrices and partial matrix correlation between three matrices.
cor.matrix | Function to obtain the correlation between two matrices and partial matrix correlation between three matrices.
cor.matrix.partial | Function to obtain the correlation between two matrices and partial matrix correlation between three matrices.
cor.matrix2 | Function to obtain the correlation between two matrices and partial matrix correlation between three matrices.
cor.procrustes | Function to obtain the correlation between two matrices and partial matrix correlation between three matrices.
flona | Hypothetical data for SYNCSA
matmult.syncsa | Matrix multiplication
matrix.p | Matrix P
matrix.t | Matrix T
matrix.x | Matrix X
optimal | Searching for optimal traits
organize.syncsa | Function for organize data for Package SYNCSA
part.cor | First-order partial correlation coefficient
pca | Principal Components Analysis (PCA) with NA (missing data)
permut.row.matrix | Permutate rows in a matrix
permut.vector | Permutate a vector
plot.pcasyncsa | Principal Components Analysis (PCA) with NA (missing data)
print.optimal | Searching for optimal traits
print.pcasyncsa | Principal Components Analysis (PCA) with NA (missing data)
print.syncsa | SYNCSA
pro.matrix | Function to obtain the correlation between two matrices and partial matrix correlation between three matrices.
pro.matrix.partial | Function to obtain the correlation between two matrices and partial matrix correlation between three matrices.
pro.matrix2 | Function to obtain the correlation between two matrices and partial matrix correlation between three matrices.
procrustes.partial | Procrustes and Partial Procrustes correlations.
procrustes.syncsa | Procrustes and Partial Procrustes correlations.
ProgressBAR | Text Progress Bar
rao.diversity | Rao's quadratic entropy
SYNCSA | SYNCSA
syncsa | SYNCSA
var.dummy | Generate dummy variable
var.type | Check the type of variables