R: Breast and Ovarian Cancers Survival Information

BRCAOV.survInfo {survminer} | R Documentation

## Breast and Ovarian Cancers Survival Information

### Description

Breat and Ovarian cancers survival information from the RTCGA.clinical R/Bioconductor package.http://rtcga.github.io/RTCGA/.

### Usage

    data("BRCAOV.survInfo")

### Format

A data frame with 1674 rows and 4 columns.

     - times: follow-up time;
     - bcr_patient_barcode: Patient bar code;
     - patient.vital_status = survival status. 0 = alive, 1 = dead;
     - admin.disease_code: disease code. brca = breast cancer, ov = ovarian
     cancer.

### Source

From the RTCGA.clinical R/Bioconductor package. The data is generated as follow:

    # Installing RTCGA.clinical
    source("https://bioconductor.org/biocLite.R")
    biocLite("RTCGA.clinical")

    # Generating the BRCAOV survival information
    library(RTCGA.clinical)
    survivalTCGA(BRCA.clinical, OV.clinical,
    extract.cols = "admin.disease_code") -> BRCAOV.survInfo

### Examples

    data(BRCAOV.survInfo)
    library(survival)
    fit <- survfit(Surv(times, patient.vital_status) ~ admin.disease_code,
               data = BRCAOV.survInfo)
    ggsurvplot(fit, data = BRCAOV.survInfo, risk.table = TRUE)

[Package survminer version 0.4.1 Index]