R: Run STAPLE on a set of nifti images

staple_bin_img {stapler} | R Documentation

## Run STAPLE on a set of nifti images

### Description

Run STAPLE on a set of nifti images

### Usage

    staple_bin_img(x, set_orient = FALSE, verbose = TRUE, ...)

    staple_multi_img(x, set_orient = FALSE, verbose = TRUE, ...)

### Arguments

`x` | Character vector of filenames or list of arrays/images
`set_orient` | Should the orientation be set to the same if the images are `niftiImage`s
`verbose` | print diagnostic messages
`...` | Additional arguments to `staple_bin_mat`

### Value

A list similar to `staple_bin_mat`, but has a resulting image

### Examples

    n = 5
    r = 1000
    x = lapply(seq(n), function(i) {
       x = rbinom(n = r, size = 1, prob = 0.5)
       array(x, dim = c(10,10, 10))
     })
    staple_out = staple_bin_img(x, set_orient = FALSE)

    n = 5
    r = 1000
    x = lapply(seq(n), function(i) {
       x = rbinom(n = r, size = 5, prob = 0.5)
       array(x, dim = c(10,10, 10))
     })
    staple_out = staple_multi_img(x, set_orient = FALSE)

[Package stapler version 0.6.5 Index]