R: Extract odds ratios, 95% CI and pvalues

odds {SNPassoc} | R Documentation

## Extract odds ratios, 95% CI and pvalues

### Description

Extract odds ratios, 95

### Usage

     odds(x, model=c("log-additive", "dominant", "recessive", "overdominant", "codominant"),
          sorted=c("no","p-value","or"))

### Arguments

`x` | an object of class 'WGassociation' output of WGassociation
`model` | model to be extracted. Only first one is used. The first letter is enough, low or upper case.
`sorted` | Sort the output by P value or OR.

### Value

A matrix with OR 95% CI (lower, upper) and P value for the selected model. For codominant model, the OR and 95%CI are given for heterozygous and homozigous.

### References

JR Gonzalez, L Armengol, X Sole, E Guino, JM Mercader, X Estivill, V Moreno. SNPassoc: an R package to perform whole genome association studies. Bioinformatics, 2007;23(5):654-5.

### Examples

     data(SNPs)
     datSNP<-setupSNP(SNPs,6:40,sep="")
     ans<-WGassociation(casco~1,data=datSNP,model="all")
     odds(ans)

[Package SNPassoc version 1.9-2 Index]