$<-.setupSNP	setupSNP
additive	inheritance
additive.default	SNPassoc-internal
additive.snp	snp
additive.WGassociation	WGassociation
as.snp	snp
assoc	SNPassoc-internal
association	association
association.fit	SNPassoc-internal
Bonferroni.sig	BonferroniSig
codominant	inheritance
codominant.default	SNPassoc-internal
codominant.snp	snp
codominant.WGassociation	WGassociation
crea.lab	SNPassoc-internal
dominant	inheritance
dominant.default	SNPassoc-internal
dominant.snp	snp
dominant.WGassociation	WGassociation
expandsetupSNP	SNPassoc-internal
extractPval	SNPassoc-internal
extractPval.i	SNPassoc-internal
geneticModel	inheritance
GenomicControl	GenomicControl
GenotypeRate	SNPassoc-internal
getSignificantSNPs	getSignificantSNPs
haplo.inter.fit	SNPassoc-internal
haplo.interaction	haplointeraction
HapMap	HapMap
HapMap.SNPs.pos	HapMap
inheritance	inheritance
int	int
interactionPval	interactionPval
interleave	SNPassoc-internal
intervals	intervals
intervals.dif	SNPassoc-internal
intervals.haplo.glm	intervals
intervals.or	SNPassoc-internal
is.Monomorphic	isMonomorphic
is.quantitative	SNPassoc-internal
is.snp	snp
labels.setupSNP	setupSNP
labels.WGassociation	WGassociation
LD	LD
LD.setupSNP	LD
LD.snp	LD
LDplot	LD
LDtable	LD
make.geno	makegeno
maxstat	maxstat
maxstat.default	maxstat
maxstat.matrix	maxstat
maxstat.setupSNP	maxstat
maxstat.table	maxstat
modelTest	SNPassoc-internal
odds	odds
orderChromosome	SNPassoc-internal
overdominant	inheritance
overdominant.default	SNPassoc-internal
overdominant.WGassociation	WGassociation
permTest	permTest
plot.permTest	permTest
plot.setupSNP	setupSNP
plot.snp	snp
plot.SNPinteraction	interactionPval
plot.WGassociation	plotWGassociation
plotMissing	plotMissing
print.haploOut	haplointeraction
print.intervals	intervals
print.maxstat	maxstat
print.permTest	permTest
print.snp	snp
print.SNPinteraction	interactionPval
print.snpOut	association
print.summary.snp	snp
print.tableHWE	tableHWE
print.WGassociation	WGassociation
pvalTest	SNPassoc-internal
pvalues	WGassociation
pvalues.WGassociation	WGassociation
qqpval	qqpval
recessive	inheritance
recessive.default	SNPassoc-internal
recessive.snp	snp
recessive.WGassociation	WGassociation
reorder.snp	snp
resHapMap	HapMap
scanWGassociation	scanWGassociation
setupSNP	setupSNP
snp	snp
SNPassoc-internal	SNPassoc-internal
SNPHWE	SNPassoc-internal
SNPs	SNPs
SNPs.info.pos	SNPs
sortSNPs	sortSNPs
summary.haplo.glm	intervals
summary.setupSNP	setupSNP
summary.snp	snp
summary.WGassociation	WGassociation
table.corner	SNPassoc-internal
table.interaction	SNPassoc-internal
Table.mean.se	Tablemeanse
Table.N.Per	TableNPer
tableHWE	tableHWE
togeno	SNPassoc-internal
trim	SNPassoc-internal
WGassociation	WGassociation
WGstats	WGassociation
[.setupSNP	setupSNP
[.snp	snp
[.WGassociation	WGassociation
[<-.setupSNP	setupSNP
[[<-.setupSNP	setupSNP
