R: Internal SNPstat functions

SNPassoc-internal {SNPassoc} | R Documentation

## Internal SNPstat functions

### Description

Internal SNPassoc functions

### Usage

    association.fit(var, dep, adj, quantitative, type, level,
           nIndiv, genotypingRate = 0, ...)
    extractPval(x)
    extractPval.i(i,x,pos,models)
    SNPHWE(x)
    GenotypeRate(x)
    haplo.inter.fit(geno, var2, dep, adj = NULL, fam,
              haplo.freq.min, ...)
    crea.lab(x,pos.ini,cex,dist)
    orderChromosome(x)
    togeno(f,sep=sep,lab=lab)
    expandsetupSNP(o)
    pvalTest(dataX,Y,quantitative,type,genotypingRate)
    modelTest(X,Y,quantitative,type,genotypingRate)
    assoc(y,x,test="lrt",quantitative)
    trim(s)
    interleave(..., append.source=TRUE, sep=": ", drop=FALSE)
    ## Default S3 method:
    codominant(o)
    ## Default S3 method:
    dominant(o)
    ## Default S3 method:
    recessive(o)
    ## Default S3 method:
    overdominant(o)
    ## Default S3 method:
    additive(o)

### Details

These are not to be called by the user

[Package SNPassoc version 1.9-2 Index]