| FetchData {SeuratObject} | R Documentation |
Retrieves data (feature expression, PCA scores, metrics, etc.) for a set of cells in a Seurat object
FetchData(object, ...)
## S3 method for class 'DimReduc'
FetchData(
object,
vars,
cells = NULL,
slot = c("embeddings", "loadings", "projected"),
...
)
## S3 method for class 'Seurat'
FetchData(object, vars, cells = NULL, slot = "data", ...)
object |
An object |
... |
Arguments passed to other methods |
vars |
List of all variables to fetch, use keyword “ident” to pull identity classes |
cells |
Cells to collect data for (default is all cells) |
slot |
Slot to pull feature data for |
A data frame with cells as rows and cellular data as columns
pc1 <- FetchData(object = pbmc_small, vars = 'PC_1')
head(x = pc1)
head(x = FetchData(object = pbmc_small, vars = c('groups', 'ident')))