R: Get Cell Embeddings

Embeddings {SeuratObject} | R Documentation

## Get Cell Embeddings

### Description

Get Cell Embeddings

### Usage

    Embeddings(object, ...)

    ## S3 method for class 'DimReduc'
    Embeddings(object, ...)

    ## S3 method for class 'Seurat'
    Embeddings(object, reduction = "pca", ...)

### Arguments

`object` | An object
`...` | Arguments passed to other methods
`reduction` | Name of reduction to pull cell embeddings for

### Value

The embeddings matrix

### Examples

    # Get the embeddings directly from a DimReduc object
    Embeddings(object = pbmc_small[["pca"]])[1:5, 1:5]

    # Get the embeddings from a specific DimReduc in a Seurat object
    Embeddings(object = pbmc_small, reduction = "pca")[1:5, 1:5]

[Package SeuratObject version 4.1.0 Index]