R: SeuratObject: Data Structures for Single Cell Data

SeuratObject-package {SeuratObject} | R Documentation

## SeuratObject: Data Structures for Single Cell Data

### Description

Defines S4 classes for single-cell genomic data and associated information, such as dimensionality reduction embeddings, nearest-neighbor graphs, and spatially-resolved coordinates. Provides data access methods and R-native hooks to ensure the Seurat object is familiar to other R users. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, and Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031> for more details.

### Author(s)

Maintainer: Paul Hoffman seurat@nygenome.org (ORCID)

Authors:

- Rahul Satija rsatija@nygenome.org (ORCID)

- Andrew Butler abutler@nygenome.org (ORCID)

- Tim Stuart tstuart@nygenome.org (ORCID)

Other contributors:

- Jeff Farrell jfarrell@g.harvard.edu [contributor]

- Shiwei Zheng szheng@nygenome.org (ORCID) [contributor]

- Christoph Hafemeister chafemeister@nygenome.org (ORCID) [contributor]

- Patrick Roelli proelli@nygenome.org [contributor]

- Yuhan Hao yhao@nygenome.org (ORCID) [contributor]

### See Also

Useful links:

- https://mojaveazure.github.io/seurat-object/

- https://github.com/mojaveazure/seurat-object

- Report bugs at https://github.com/mojaveazure/seurat-object/issues

[Package SeuratObject version 4.1.0 Index]