R: Create Spatial Coordinates

CreateFOV {SeuratObject} | R Documentation

## Create Spatial Coordinates

### Description

Create Spatial Coordinates

### Usage

    CreateFOV(coords, ...)

    ## S3 method for class 'Centroids'
    CreateFOV(
      coords,
      molecules = NULL,
      assay = "Spatial",
      key = NULL,
      name = NULL,
      ...
    )

    ## S3 method for class 'data.frame'
    CreateFOV(
      coords,
      type = c("segmentation", "centroids"),
      nsides = Inf,
      radius = NULL,
      theta = 0L,
      molecules = NULL,
      assay = "Spatial",
      key = NULL,
      name = NULL,
      ...
    )

    ## S3 method for class 'list'
    CreateFOV(coords, molecules = NULL, assay = "Spatial", key = NULL, ...)

    ## S3 method for class 'Segmentation'
    CreateFOV(
      coords,
      molecules = NULL,
      assay = "Spatial",
      key = NULL,
      name = NULL,
      ...
    )

### Arguments

`coords` | Spatial coordinates
`...` | Arguments passed to other methods
`molecules` | A `data.frame` with spatially-resolved molecule information or a `Molecules` object
`assay` | Name of associated assay
`key` | Key for these spatial coordinates
`name` | When `coords` is a `data.frame`, `Centroids`, or `Segmentation`, name to store coordinates as
`type` | When providing a `data.frame`, specify if the coordinates represent a cell segmentation or voxel centroids
`nsides` | The number of sides to represent cells/spots; pass `Inf` to plot as circles
`radius` | Radius of shapes when plotting
`theta` | Angle to adjust shapes when plotting

### Value

A `FOV` object

### See Also

`FOV-class`

[Package SeuratObject version 4.1.0 Index]