R: A small example version of the PBMC dataset

pbmc_small {SeuratObject} | R Documentation

## A small example version of the PBMC dataset

### Description

A subsetted version of 10X Genomics' 3k PBMC dataset

### Usage

    pbmc_small

### Format

A Seurat object with the following slots filled

assays

  Currently only contains one assay ("RNA" - scRNA-seq expression data)

  - counts - Raw expression data

  - data - Normalized expression data

  - scale.data - Scaled expression data

  - var.features - names of the current features selected as variable

  - meta.features - Assay level metadata such as mean and variance

meta.data

  Cell level metadata

active.assay

  Current default assay

active.ident

  Current default idents

graphs

  Neighbor graphs computed, currently stores the SNN

reductions

  Dimensional reductions: currently PCA and tSNE

version

  Seurat version used to create the object

commands

  Command history

### Source

https://support.10xgenomics.com/single-cell-gene-expression/datasets/1.1.0/pbmc3k

[Package SeuratObject version 4.1.0 Index]