# Generated by roxygen2: do not edit by hand

S3method("$",JackStrawData)
S3method("$",Seurat)
S3method("$",SeuratCommand)
S3method("$<-",Seurat)
S3method("DefaultAssay<-",Assay)
S3method("DefaultAssay<-",DimReduc)
S3method("DefaultAssay<-",Graph)
S3method("DefaultAssay<-",Seurat)
S3method("DefaultAssay<-",SpatialImage)
S3method("Idents<-",Seurat)
S3method("Index<-",Neighbor)
S3method("JS<-",DimReduc)
S3method("JS<-",JackStrawData)
S3method("Key<-",Assay)
S3method("Key<-",DimReduc)
S3method("Key<-",SpatialImage)
S3method("Loadings<-",DimReduc)
S3method("Misc<-",Assay)
S3method("Misc<-",DimReduc)
S3method("Misc<-",Seurat)
S3method("Project<-",Seurat)
S3method("Tool<-",Seurat)
S3method("VariableFeatures<-",Assay)
S3method("VariableFeatures<-",Seurat)
S3method("[",Assay)
S3method("[",DimReduc)
S3method("[",Seurat)
S3method("[",SeuratCommand)
S3method("[",SpatialImage)
S3method("[[",Assay)
S3method("[[",DimReduc)
S3method("[[",Seurat)
S3method("levels<-",Seurat)
S3method(.DollarNames,JackStrawData)
S3method(.DollarNames,Seurat)
S3method(.DollarNames,SeuratCommand)
S3method(AddMetaData,Assay)
S3method(AddMetaData,Seurat)
S3method(Cells,DimReduc)
S3method(Cells,Neighbor)
S3method(Cells,SpatialImage)
S3method(Cells,default)
S3method(Command,Seurat)
S3method(CreateSeuratObject,Assay)
S3method(CreateSeuratObject,default)
S3method(DefaultAssay,Assay)
S3method(DefaultAssay,DimReduc)
S3method(DefaultAssay,Graph)
S3method(DefaultAssay,Seurat)
S3method(DefaultAssay,SeuratCommand)
S3method(DefaultAssay,SpatialImage)
S3method(Distances,Neighbor)
S3method(Embeddings,DimReduc)
S3method(Embeddings,Seurat)
S3method(GetAssayData,Assay)
S3method(GetAssayData,Seurat)
S3method(GetImage,Seurat)
S3method(GetImage,SpatialImage)
S3method(GetTissueCoordinates,Seurat)
S3method(GetTissueCoordinates,SpatialImage)
S3method(HVFInfo,Assay)
S3method(HVFInfo,Seurat)
S3method(Idents,Seurat)
S3method(Index,Neighbor)
S3method(Indices,Neighbor)
S3method(IsGlobal,DimReduc)
S3method(IsGlobal,SpatialImage)
S3method(IsGlobal,default)
S3method(JS,DimReduc)
S3method(JS,JackStrawData)
S3method(Key,Assay)
S3method(Key,DimReduc)
S3method(Key,Seurat)
S3method(Key,SpatialImage)
S3method(Loadings,DimReduc)
S3method(Loadings,Seurat)
S3method(Misc,Assay)
S3method(Misc,DimReduc)
S3method(Misc,Seurat)
S3method(Project,Seurat)
S3method(Radius,SpatialImage)
S3method(RenameCells,Assay)
S3method(RenameCells,DimReduc)
S3method(RenameCells,Neighbor)
S3method(RenameCells,Seurat)
S3method(RenameCells,SpatialImage)
S3method(RenameIdents,Seurat)
S3method(ReorderIdent,Seurat)
S3method(S4ToList,default)
S3method(S4ToList,list)
S3method(SVFInfo,Assay)
S3method(SVFInfo,Seurat)
S3method(SetAssayData,Assay)
S3method(SetAssayData,Seurat)
S3method(SetIdent,Seurat)
S3method(SpatiallyVariableFeatures,Assay)
S3method(SpatiallyVariableFeatures,Seurat)
S3method(StashIdent,Seurat)
S3method(Stdev,DimReduc)
S3method(Stdev,Seurat)
S3method(Tool,Seurat)
S3method(VariableFeatures,Assay)
S3method(VariableFeatures,Seurat)
S3method(Version,Seurat)
S3method(WhichCells,Assay)
S3method(WhichCells,Seurat)
S3method(as.Graph,Matrix)
S3method(as.Graph,Neighbor)
S3method(as.Graph,matrix)
S3method(as.Neighbor,Graph)
S3method(as.list,SeuratCommand)
S3method(as.logical,JackStrawData)
S3method(as.sparse,Matrix)
S3method(as.sparse,data.frame)
S3method(as.sparse,matrix)
S3method(dim,Assay)
S3method(dim,DimReduc)
S3method(dim,Neighbor)
S3method(dim,Seurat)
S3method(dim,SpatialImage)
S3method(dimnames,Assay)
S3method(dimnames,DimReduc)
S3method(dimnames,Seurat)
S3method(droplevels,Seurat)
S3method(head,Assay)
S3method(head,Seurat)
S3method(length,DimReduc)
S3method(levels,Seurat)
S3method(merge,Assay)
S3method(merge,DimReduc)
S3method(merge,Seurat)
S3method(names,DimReduc)
S3method(names,Seurat)
S3method(print,DimReduc)
S3method(subset,Assay)
S3method(subset,DimReduc)
S3method(subset,Seurat)
S3method(subset,SpatialImage)
S3method(tail,Assay)
S3method(tail,Seurat)
export("%iff%")
export("%||%")
export("DefaultAssay<-")
export("Idents<-")
export("Index<-")
export("JS<-")
export("Key<-")
export("Loadings<-")
export("Misc<-")
export("Project<-")
export("Tool<-")
export("VariableFeatures<-")
export(AddMetaData)
export(Assays)
export(AttachDeps)
export(Cells)
export(CellsByIdentities)
export(CheckDots)
export(CheckGC)
export(Command)
export(CreateAssayObject)
export(CreateDimReducObject)
export(CreateSeuratObject)
export(DefaultAssay)
export(DefaultDimReduc)
export(Distances)
export(Embeddings)
export(FetchData)
export(FilterObjects)
export(GetAssayData)
export(GetImage)
export(GetTissueCoordinates)
export(Graphs)
export(HVFInfo)
export(Idents)
export(Images)
export(Index)
export(Indices)
export(IsGlobal)
export(IsMatrixEmpty)
export(IsS4List)
export(JS)
export(Key)
export(ListToS4)
export(Loadings)
export(LogSeuratCommand)
export(Misc)
export(Neighbors)
export(PackageCheck)
export(Project)
export(Radius)
export(RandomName)
export(Reductions)
export(RenameAssays)
export(RenameCells)
export(RenameIdents)
export(ReorderIdent)
export(RowMergeSparseMatrices)
export(S4ToList)
export(SVFInfo)
export(SetAssayData)
export(SetIdent)
export(SpatiallyVariableFeatures)
export(StashIdent)
export(Stdev)
export(Tool)
export(UpdateSeuratObject)
export(VariableFeatures)
export(Version)
export(WhichCells)
export(as.Graph)
export(as.Neighbor)
export(as.Seurat)
export(as.sparse)
export(colMeans)
export(colSums)
export(rowMeans)
export(rowSums)
exportClasses(Assay)
exportClasses(DimReduc)
exportClasses(Graph)
exportClasses(JackStrawData)
exportClasses(Neighbor)
exportClasses(Seurat)
exportClasses(SeuratCommand)
exportClasses(SpatialImage)
exportMethods("[[<-")
exportMethods(colMeans)
exportMethods(colSums)
exportMethods(rowMeans)
exportMethods(rowSums)
exportMethods(show)
importClassesFrom(Matrix,dgCMatrix)
importFrom(Matrix,Matrix)
importFrom(Matrix,colMeans)
importFrom(Matrix,colSums)
importFrom(Matrix,rowMeans)
importFrom(Matrix,rowSums)
importFrom(Rcpp,evalCpp)
importFrom(grDevices,as.raster)
importFrom(grid,nullGrob)
importFrom(methods,"slot<-")
importFrom(methods,.hasSlot)
importFrom(methods,as)
importFrom(methods,getClassDef)
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,setClass)
importFrom(methods,setClassUnion)
importFrom(methods,setOldClass)
importFrom(methods,show)
importFrom(methods,slot)
importFrom(methods,slotNames)
importFrom(rlang,"%||%")
importFrom(rlang,enquo)
importFrom(rlang,eval_tidy)
importFrom(rlang,is_null)
importFrom(rlang,is_quosure)
importFrom(stats,na.omit)
importFrom(tools,file_path_sans_ext)
importFrom(utils,.DollarNames)
importFrom(utils,argsAnywhere)
importFrom(utils,head)
importFrom(utils,isS3method)
importFrom(utils,isS3stdGeneric)
importFrom(utils,methods)
importFrom(utils,packageVersion)
importFrom(utils,tail)
useDynLib(SeuratObject)
