AddMetaData             Add in metadata associated with either cells or
                        features.
Assay-class             The Assay Class
Assay-methods           'Assay' Methods
AssayData               Get and Set Assay Data
Assays                  Query Specific Object Types
AttachDeps              Attach Required Packages
Cells                   Get cells present in an object
CellsByIdentities       Get cell names grouped by identity class
CellsByImage            Get a vector of cell names associated with an
                        image (or set of images)
CheckGC                 Conditional Garbage Collection
Command                 Get SeuratCommands
CreateAssayObject       Create an Assay object
CreateDimReducObject    Create a DimReduc object
CreateSeuratObject      Create a 'Seurat' object
DefaultAssay            Default Assay
DimReduc-class          The Dimensional Reduction Class
DimReduc-methods        'DimReduc' Methods
Distances               Get the Neighbor nearest neighbors distance
                        matrix
Embeddings              Get Cell Embeddings
FetchData               Access cellular data
GetImage                Get image data
GetTissueCoordinates    Get tissue coordinates
Graph-class             The Graph Class
HVFInfo                 Highly Variable Features
Idents                  Get, set, and manipulate an object's identity
                        classes
Images                  Pull spatial image names
Index                   Get Neighbor algorithm index
Indices                 Get Neighbor nearest neighbor index matrices
IsGlobal                Is an object global/persistent?
IsMatrixEmpty           Check if a matrix is empty
JS                      Get and set JackStraw information
JackStrawData-class     The JackStrawData Class
JackStrawData-methods   'JackStrawData' Methods
Key                     Get and set object keys
Loadings                Get and set feature loadings
LogSeuratCommand        Log a command
Misc                    Get and set miscellaneous data
Neighbor-class          The Neighbor class
Neighbor-methods        'Neighbor' Methods
Project                 Get and set project information
Radius                  Get the spot radius from an image
RenameAssays            Rename assays in a 'Seurat' object
RenameCells             Rename cells
RowMergeSparseMatrices
                        Merge Sparse Matrices by Row
Seurat-class            The Seurat Class
Seurat-methods          Seurat Methods
SeuratCommand-class     The SeuratCommand Class
SeuratCommand-methods   'SeuratCommand' Methods
SeuratObject-package    SeuratObject: Data Structures for Single Cell
                        Data
SpatialImage-class      The SpatialImage class
SpatialImage-methods    'SpatialImage' methods
Stdev                   Get the standard deviations for an object
Tool                    Get and set additional tool data
UpdateSeuratObject      Update old Seurat object to accommodate new
                        features
Version                 Get Version Information
WhichCells              Identify cells matching certain criteria
as.Graph                Coerce to a 'Graph' Object
as.Neighbor             Coerce to a 'Neighbor' Object
as.Seurat               Coerce to a 'Seurat' Object
as.sparse               Cast to Sparse
pbmc_small              A small example version of the PBMC dataset
s4list                  S4/List Conversion
seurat-class            The Seurat Class
