14c1058b2d6d010c568d15f5570b5166 *CITATION
66f5fbe19075d875e0f6078303cc7757 *DESCRIPTION
a278e4ddf7e18bdb686d29deeaddb9cc *INDEX
25630457e3b047be8df1374055e235b0 *LICENSE
cbc92d7dea02c60cb8801d5ee6e1d71f *Meta/Rd.rds
1ee90da3e17c17ee7cdae4f27b4d7288 *Meta/demo.rds
4d1492de7968466564e971368d24d147 *Meta/features.rds
8a7c06cf2a3316cf9745dfb063219fba *Meta/hsearch.rds
3492555b1c09cd61990accaebfe4cd0d *Meta/links.rds
cd0ca1d3b0fe9b926dba96bd111865dc *Meta/nsInfo.rds
76ab9b2f1f697204079e830e66d06d36 *Meta/package.rds
f47f171258d37858064cb460710ce893 *NAMESPACE
d6c68f1fe41ced6e98a766a3757313da *R/seqminer
6978762a298e6f6c2b7fa427a778d09f *R/seqminer.rdb
6ae24c5a2826e24e810732abbcdaf5be *R/seqminer.rdx
df07ff391104874a068fcebeba818c2b *benchmark/output.png
172c0f6fefb190a6621d83626879d8df *benchmark/seqminer2_benchmark_script.txt
0fc479584e48a4ae306ba1121fa429ed *bgen/all.anno.filtered.extract.bgen
be4d632ee62142e3fceacf0a5c5e7f2d *bgen/all.anno.filtered.extract.bgen.bgi
34ab676ae0614287c6170163dbcc0c44 *demo/annotate.R
80afcb0fa924316b839b3d56655d05fe *demo/meta.workflow.R
076b6535f57410f9475402c8748869cf *demo/vcf.workflow.R
4b7396b2049f58098b778ba087cf97e2 *help/AnIndex
0e18f2afcb245c650a23d7d2644966ba *help/aliases.rds
06efb984d2b209cffadf630d5aca050a *help/paths.rds
96350391cfb48609efb6d54f60a0e2c6 *help/seqminer.rdb
d44cff50b4fef95c337095a9aab9d037 *help/seqminer.rdx
fa194219fa5a42df99fa057ac9a59eeb *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
98dc0015ee6a84bc95101031db4b5a5a *html/SeqMiner.html
62ef0784bb7af368ad58a9f4ef7892f9 *html/addJob.html
909401df7f009f549f98a4a5233b1f97 *html/annotateGene.html
4b7a4490c8c198ee25c95c9db51f7a32 *html/annotatePlain.html
7c6fdb0728e258c6bdabe312b6224ceb *html/annotateVcf.html
a1635445ae9c1a30719573d5972dd83a *html/createSingleChromosomeBCFIndex.html
d2d2520b2fa7eb301643f9db0ecb725c *html/createSingleChromosomeVCFIndex.html
ccf78fd3aaefa35e87d318d255e2a905 *html/download.annotation.resource.html
e0b6ff23ee4ebd5758c39f918199d532 *html/getCovPair.html
14e231a38d731e747d22222f5d098023 *html/getRefBase.html
b9a8a66498111568fe25c7b959bff341 *html/hasIndex.html
da9edbd2495f25949db06d60fe6d4a61 *html/isDirWritable.html
2943eea5b753174b159425bf5c853cae *html/isInRange.html
ac54e9f5648b82bf1118462cd9daaa75 *html/isTabixRange.html
0c8ffc36698f7c3d32ae75b417246c8f *html/isURL.html
57943d73d66276254b9b482f630dcc88 *html/makeAnnotationParameter.html
667435d08e08b93135f0fe696fb341e1 *html/newJob.html
c620256aebda8e31a7501bfdb4984251 *html/newWorkflow.html
a1ac7949e5eb121005b5501260634546 *html/openPlink.html
d610321c9887945b78f4310861531d5f *html/readBGENToListByGene.html
d8d336ec33d7d27de7e0facac00b068b *html/readBGENToListByRange.html
f9e51ac3939b0afca94536a8b3e2fb71 *html/readBGENToMatrixByGene.html
f7c498e250e2ff02e72ea75043e9b7cd *html/readBGENToMatrixByRange.html
7968c219fd54f80dc98872b73eaaff96 *html/readPlinkToMatrixByIndex.html
69b359de618dff4597704f3d511219a7 *html/readSingleChromosomeBCFToMatrixByRange.html
b10cc71ffd035cda0e96497d9980c6bb *html/readSingleChromosomeVCFToMatrixByRange.html
9e53c4f3262d4d368d810f44d6d21e58 *html/readVCFToListByGene.html
80c5a4ca2ac685998010441b88379b47 *html/readVCFToListByRange.html
98c52d966137209ff78214f0a7f86299 *html/readVCFToMatrixByGene.html
844a66657a286605716b21fd902a7786 *html/readVCFToMatrixByRange.html
bf4826e76991619ec6e556eeffb9466e *html/rvmeta.readCovByRange.html
29235d1ee4476b230b845dfd80017d2d *html/rvmeta.readDataByGene.html
d50199c75515c013d4fb883281dc52c7 *html/rvmeta.readDataByRange.html
1871c0dba5df6e381bc8e4fbd141716d *html/rvmeta.readNullModel.html
6d6d03bf9c2b777519caa318ba7be059 *html/rvmeta.readScoreByRange.html
ae77b06d533b79e24217edc660166ed7 *html/rvmeta.readSkewByRange.html
b7339fef7a7eb219262270db960e3ac5 *html/rvmeta.writeCovData.html
3a4f38642ea1dc42b3a3959267243529 *html/rvmeta.writeScoreData.html
a9661971e5fd1eaa6018ff6b25be602b *html/sub-.PlinkFile.html
b4ad81cb3319613240cd3638017aa79c *html/tabix.createIndex.html
c03411671b1264092b7e45fbc11bbeaa *html/tabix.createIndex.meta.html
5d694278e3096e544778d36c2cb9d98b *html/tabix.createIndex.vcf.html
a0673aaac953f5fcfc17980f096c2254 *html/tabix.read.header.html
1b69ca6750bc1b18ef6980e577f080ea *html/tabix.read.html
5d42df59012214845728082080d0ceb4 *html/tabix.read.table.html
bfa769c54bbed9de47e763627f22abfe *html/validateAnnotationParameter.html
8160d935397e3dc17f50ff6c131feea5 *html/verifyFilename.html
3e54944aede32fadf81b086ecd12c844 *html/writeWorkflow.html
075015db1961b4125d46f1b404175f31 *libs/x64/seqminer.dll
9ebec06f2cb97dcef8b5ada47369469a *plink/all.anno.filtered.extract.bed
0190a64ccb403c31bad91f3ee2e3c833 *plink/all.anno.filtered.extract.bim
614a24fccf790641566a70999938ee64 *plink/all.anno.filtered.extract.fam
751c636c82b643e5a9498591b5218032 *rvtests/cfh.refFlat.txt
b94af6795e947307028d232aee84d501 *rvtests/rvtest.MetaCov.assoc.gz
6ed4d335152649bfe88ce972d23440e5 *rvtests/rvtest.MetaCov.assoc.gz.tbi
6e9beac74bc1ec51eeead95a58c2e57c *rvtests/rvtest.MetaScore.assoc.anno.gz
543690c148fb9bccb7e8b3e05826f5f6 *rvtests/rvtest.MetaScore.assoc.anno.gz.tbi
f3c9e5e6899c4ad42aa59cb70084b6ee *rvtests/rvtest.MetaScore.assoc.gz
a5b24886972d5f229068eee3449f076c *rvtests/rvtest.MetaScore.assoc.gz.tbi
99237619851543e09bc2906e6a66c2d7 *rvtests/rvtest.MetaSkew.assoc.gz
a2d22ed038bcdd63b2200f8a495ce0d8 *rvtests/rvtest.MetaSkew.assoc.gz.tbi
e3b70c9d450ffc3505f6b60025605363 *tabanno/codon.txt
587f0fb382bf9328f31d9c0b48dc63ba *tabanno/input.100.vcf.gz
fdb819f529759c78b5023b530904974f *tabanno/input.demo.vcf
cddf8f9094beb0f87332bee2abb860b8 *tabanno/input.test.plain.txt
5da124f1fde1b084dafcf5a870f46b1e *tabanno/input.test.vcf
7e51a21043ce478b9cd506e0b8162697 *tabanno/priority.epact.txt
23e5d1b21219abad05b0503e88af00be *tabanno/priority.txt
e68c266d8b91871bee9d06053fc338b3 *tabanno/test.bed
d29bd9d0fefcb9559e3b3b649007b3b6 *tabanno/test.dbNSFP.gz
cead2c0cb02fe1fd2ed7cd610c38bc3d *tabanno/test.dbNSFP.gz.tbi
04b35b0c9a1d2799782d2ad34fa0684c *tabanno/test.fa
54932744e3eed15da9808ea28475cc98 *tabanno/test.fa.fai
ed581f9cebe1457335b2fd0463f88f58 *tabanno/test.gene.txt
1da7da33635f876f5633bee3f0225ed9 *tabanno/tmp.vcf
4a020714b9fa93eba566e0c2bb25086b *test-triallelic/bi.MetaCov.assoc.gz
2eee7ff9004abe2de40acde2760b5866 *test-triallelic/bi.MetaCov.assoc.gz.tbi
850b91847ee903f1fdd318aab9c9f0e5 *test-triallelic/bi.MetaScore.assoc.gz
68e1934efe879e01ac7da855d29e19f7 *test-triallelic/bi.MetaScore.assoc.gz.tbi
890073ddabccd2c71900390ae8000700 *test-triallelic/test2.study1.MetaCov.assoc.gz
2f34c1346772b0f562538cde569d73f2 *test-triallelic/test2.study1.MetaCov.assoc.gz.tbi
e0b338973acced5ff87498c8619deb14 *test-triallelic/test2.study1.MetaScore.assoc.gz
f33bcb855edc6be90e220caa636c2c96 *test-triallelic/test2.study1.MetaScore.assoc.gz.tbi
603e56109c44ed35b1ad1fe1d650ede2 *test-triallelic/test2.study2.MetaCov.assoc.gz
1455b60178b299a5812998672ffd13e1 *test-triallelic/test2.study2.MetaCov.assoc.gz.tbi
b70054f3a6eda6678589f53d8402d533 *test-triallelic/test2.study2.MetaScore.assoc.gz
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337817ebcbac99199c69a28a3d492aa1 *test-triallelic/test2.study3.MetaCov.assoc.gz
a3ff23c263ff93c8a05d63167ef5ec60 *test-triallelic/test2.study3.MetaCov.assoc.gz.tbi
5dece52eca524765dcf1d01945a9267a *test-triallelic/test2.study3.MetaScore.assoc.gz
0f5a64d003760e23cf42a9abdc927a63 *test-triallelic/test2.study3.MetaScore.assoc.gz.tbi
890073ddabccd2c71900390ae8000700 *test-triallelic/tri.MetaCov.assoc.gz
2f34c1346772b0f562538cde569d73f2 *test-triallelic/tri.MetaCov.assoc.gz.tbi
f6c5fe224a30c61aa809e68850b88e94 *test-triallelic/tri.MetaScore.assoc.gz
8fe4f2a4966b755f39e1587d11efb046 *test-triallelic/tri.MetaScore.assoc.gz.tbi
03b777e22fde02a18b2f523ff327e2f2 *tests/correct.Rdata
e95e6420f0b8bdf2306dc87628a2c9b5 *vcf/1000g.phase1.20110521.CFH.var.anno.vcf.gz
8e1e8a6b0944b906b913d315aa4f8fe0 *vcf/1000g.phase1.20110521.CFH.var.anno.vcf.gz.tbi
30b34178034c34db61e46eeaf01fe863 *vcf/all.anno.filtered.extract.bcf.gz
da2e7fb5756f4e027cf076ddcdb5eade *vcf/all.anno.filtered.extract.bcf.gz.bci
df429b3d6e2d5e0e6bbbcb795430d2cd *vcf/all.anno.filtered.extract.headerFixed.bcf.gz
dadea91bf7fa4c1e93edf1c7cb08f7c2 *vcf/all.anno.filtered.extract.headerFixed.bcf.gz.scIdx
ca32db876ce78d2081fca12e46e1c115 *vcf/all.anno.filtered.extract.headerFixed.vcf.gz
a30627f5fed64983816d94ff2f90369c *vcf/all.anno.filtered.extract.vcf.gz
52e0fe3425c2c050045193e14a360262 *vcf/all.anno.filtered.extract.vcf.gz.scIdx
eebfb3d8260a7def9f29034931b7f9e2 *vcf/all.anno.filtered.extract.vcf.gz.tbi
9cc4f5122bb2e3b0b6b519f8c00d4fd7 *vcf/refFlat_hg19_6col.txt.gz
