14c1058b2d6d010c568d15f5570b5166 *CITATION
8ade3af73f26d4e67c0835c9f11b67be *DESCRIPTION
a278e4ddf7e18bdb686d29deeaddb9cc *INDEX
50c28547d51e8cbb9a908e6696fedb86 *LICENSE
cbc92d7dea02c60cb8801d5ee6e1d71f *Meta/Rd.rds
1ee90da3e17c17ee7cdae4f27b4d7288 *Meta/demo.rds
4d1492de7968466564e971368d24d147 *Meta/features.rds
8a7c06cf2a3316cf9745dfb063219fba *Meta/hsearch.rds
3492555b1c09cd61990accaebfe4cd0d *Meta/links.rds
cd0ca1d3b0fe9b926dba96bd111865dc *Meta/nsInfo.rds
29947997aecda32e791712ed355b2f4d *Meta/package.rds
f47f171258d37858064cb460710ce893 *NAMESPACE
d6c68f1fe41ced6e98a766a3757313da *R/seqminer
d968670db94fb93552825e44b28241cc *R/seqminer.rdb
b79e02dd68fd5d58ccf2a19c397186dd *R/seqminer.rdx
df07ff391104874a068fcebeba818c2b *benchmark/output.png
172c0f6fefb190a6621d83626879d8df *benchmark/seqminer2_benchmark_script.txt
0fc479584e48a4ae306ba1121fa429ed *bgen/all.anno.filtered.extract.bgen
be4d632ee62142e3fceacf0a5c5e7f2d *bgen/all.anno.filtered.extract.bgen.bgi
34ab676ae0614287c6170163dbcc0c44 *demo/annotate.R
80afcb0fa924316b839b3d56655d05fe *demo/meta.workflow.R
076b6535f57410f9475402c8748869cf *demo/vcf.workflow.R
4b7396b2049f58098b778ba087cf97e2 *help/AnIndex
0e18f2afcb245c650a23d7d2644966ba *help/aliases.rds
fdb6670f1b01ec4cfa38f0e15401f86d *help/paths.rds
305799ef273fafa95888607f596f44f7 *help/seqminer.rdb
acb9614e77d912c1616004f112e20e95 *help/seqminer.rdx
492068b94e88293627ba199176a5e181 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
bc47033046a3ee99c39ee1458e1fd34b *html/SeqMiner.html
7b356f4e3ebd9459196b3010bfb1eb7f *html/addJob.html
cc18b819a659699e273d26a500eab199 *html/annotateGene.html
924a66c0f8010d94cdb315b2a5ca421d *html/annotatePlain.html
e4563a775aa4e6df8993f5796ba8749e *html/annotateVcf.html
2a2084f75a5eb532288aa40912fe7aff *html/createSingleChromosomeBCFIndex.html
24566eb482771170fe91dfb5db0a6011 *html/createSingleChromosomeVCFIndex.html
d7a43d065b00a414b1bdd66953fd8941 *html/download.annotation.resource.html
2f9c462984afafb3ea4552e4ba90635c *html/getCovPair.html
99f714d7d62b604f9175fe12a3435621 *html/getRefBase.html
ecd20b771dacf2f24c42854763e04c94 *html/hasIndex.html
20a4eacb13dfdd4d180d256d0e400e01 *html/isDirWritable.html
c5955076ad8503e38ef2f2ff9fc72c48 *html/isInRange.html
82db90d92bd5cd17b734a67dd10b3a68 *html/isTabixRange.html
a09baffb454f080c9c534a7c10baac17 *html/isURL.html
7008fc954456902d7b74422eaf166ea8 *html/makeAnnotationParameter.html
6c42185b0a3348fc6712cb3f173f595e *html/newJob.html
0946355adea3e5452951f60c8385a63d *html/newWorkflow.html
af5f918d72b7dbdad14221b1c878baf1 *html/openPlink.html
0daca9297bb83b04225c9f28b2df7d29 *html/readBGENToListByGene.html
621fba869ad4453511cf62f1609165e1 *html/readBGENToListByRange.html
e184af103e1be7a5fb3dbcebe45c6332 *html/readBGENToMatrixByGene.html
596b75e17eb8fb344174855c6380669b *html/readBGENToMatrixByRange.html
f604c3f2a0986e202a8389042c76f4df *html/readPlinkToMatrixByIndex.html
7564aacbdc7a4e83d65492b8e1d9e6a5 *html/readSingleChromosomeBCFToMatrixByRange.html
8616fdb4d549254e18dc3e4aa7a4d237 *html/readSingleChromosomeVCFToMatrixByRange.html
c9d6a2db024606a658a471370b1fda20 *html/readVCFToListByGene.html
b97217837cbb94de21a1b36b12e19a95 *html/readVCFToListByRange.html
1d1ccdb540847aea650f79e6e4ade273 *html/readVCFToMatrixByGene.html
9e53e91859ed19fdd647d7729409d641 *html/readVCFToMatrixByRange.html
f3b4c35144d6e79bfa99be11ec3afc2c *html/rvmeta.readCovByRange.html
e71363fab1915c1cda8aa50d178e0d96 *html/rvmeta.readDataByGene.html
03c63ad4e77d414d4da57a408bc532a4 *html/rvmeta.readDataByRange.html
507ea3caf5fd4bd365f1d0ba15b0a99c *html/rvmeta.readNullModel.html
63686a2e897ad08adadffee1fa0094ba *html/rvmeta.readScoreByRange.html
1bc726cb21abf8f9a6428ef8d7f53c7c *html/rvmeta.readSkewByRange.html
e4ee2210deffc157c6562f23954e0f4e *html/rvmeta.writeCovData.html
f8677a799a65cde603f1dd0dbd86f94a *html/rvmeta.writeScoreData.html
5251234995936e4c5535117b0742cba5 *html/sub-.PlinkFile.html
760c2adc7724ca99bd51af57db0b87bc *html/tabix.createIndex.html
0706b8d1c89e5fa6e877ad2e9e56647e *html/tabix.createIndex.meta.html
49f3be71148aeea9b0b9914973efa9c3 *html/tabix.createIndex.vcf.html
259688f35b6b812fc0e579e976856de3 *html/tabix.read.header.html
94ec87e67ccf020e32685994d3d00f03 *html/tabix.read.html
19c8e959bd4b5c54290ef74cc21261cd *html/tabix.read.table.html
617f7036651bbbff7bd436d1fa85696c *html/validateAnnotationParameter.html
252dcecd189ee9bbefc7a700ad571d51 *html/verifyFilename.html
8987c7830627fcbf7da5da90c2684729 *html/writeWorkflow.html
7e4f41a9b09e650befac87613c50b114 *libs/x64/seqminer.dll
9ebec06f2cb97dcef8b5ada47369469a *plink/all.anno.filtered.extract.bed
0190a64ccb403c31bad91f3ee2e3c833 *plink/all.anno.filtered.extract.bim
614a24fccf790641566a70999938ee64 *plink/all.anno.filtered.extract.fam
751c636c82b643e5a9498591b5218032 *rvtests/cfh.refFlat.txt
b94af6795e947307028d232aee84d501 *rvtests/rvtest.MetaCov.assoc.gz
6ed4d335152649bfe88ce972d23440e5 *rvtests/rvtest.MetaCov.assoc.gz.tbi
6e9beac74bc1ec51eeead95a58c2e57c *rvtests/rvtest.MetaScore.assoc.anno.gz
543690c148fb9bccb7e8b3e05826f5f6 *rvtests/rvtest.MetaScore.assoc.anno.gz.tbi
f3c9e5e6899c4ad42aa59cb70084b6ee *rvtests/rvtest.MetaScore.assoc.gz
a5b24886972d5f229068eee3449f076c *rvtests/rvtest.MetaScore.assoc.gz.tbi
99237619851543e09bc2906e6a66c2d7 *rvtests/rvtest.MetaSkew.assoc.gz
a2d22ed038bcdd63b2200f8a495ce0d8 *rvtests/rvtest.MetaSkew.assoc.gz.tbi
e3b70c9d450ffc3505f6b60025605363 *tabanno/codon.txt
587f0fb382bf9328f31d9c0b48dc63ba *tabanno/input.100.vcf.gz
fdb819f529759c78b5023b530904974f *tabanno/input.demo.vcf
cddf8f9094beb0f87332bee2abb860b8 *tabanno/input.test.plain.txt
5da124f1fde1b084dafcf5a870f46b1e *tabanno/input.test.vcf
7e51a21043ce478b9cd506e0b8162697 *tabanno/priority.epact.txt
23e5d1b21219abad05b0503e88af00be *tabanno/priority.txt
e68c266d8b91871bee9d06053fc338b3 *tabanno/test.bed
d29bd9d0fefcb9559e3b3b649007b3b6 *tabanno/test.dbNSFP.gz
cead2c0cb02fe1fd2ed7cd610c38bc3d *tabanno/test.dbNSFP.gz.tbi
04b35b0c9a1d2799782d2ad34fa0684c *tabanno/test.fa
54932744e3eed15da9808ea28475cc98 *tabanno/test.fa.fai
ed581f9cebe1457335b2fd0463f88f58 *tabanno/test.gene.txt
1da7da33635f876f5633bee3f0225ed9 *tabanno/tmp.vcf
4a020714b9fa93eba566e0c2bb25086b *test-triallelic/bi.MetaCov.assoc.gz
2eee7ff9004abe2de40acde2760b5866 *test-triallelic/bi.MetaCov.assoc.gz.tbi
850b91847ee903f1fdd318aab9c9f0e5 *test-triallelic/bi.MetaScore.assoc.gz
68e1934efe879e01ac7da855d29e19f7 *test-triallelic/bi.MetaScore.assoc.gz.tbi
890073ddabccd2c71900390ae8000700 *test-triallelic/test2.study1.MetaCov.assoc.gz
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e0b338973acced5ff87498c8619deb14 *test-triallelic/test2.study1.MetaScore.assoc.gz
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603e56109c44ed35b1ad1fe1d650ede2 *test-triallelic/test2.study2.MetaCov.assoc.gz
1455b60178b299a5812998672ffd13e1 *test-triallelic/test2.study2.MetaCov.assoc.gz.tbi
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337817ebcbac99199c69a28a3d492aa1 *test-triallelic/test2.study3.MetaCov.assoc.gz
a3ff23c263ff93c8a05d63167ef5ec60 *test-triallelic/test2.study3.MetaCov.assoc.gz.tbi
5dece52eca524765dcf1d01945a9267a *test-triallelic/test2.study3.MetaScore.assoc.gz
0f5a64d003760e23cf42a9abdc927a63 *test-triallelic/test2.study3.MetaScore.assoc.gz.tbi
890073ddabccd2c71900390ae8000700 *test-triallelic/tri.MetaCov.assoc.gz
2f34c1346772b0f562538cde569d73f2 *test-triallelic/tri.MetaCov.assoc.gz.tbi
f6c5fe224a30c61aa809e68850b88e94 *test-triallelic/tri.MetaScore.assoc.gz
8fe4f2a4966b755f39e1587d11efb046 *test-triallelic/tri.MetaScore.assoc.gz.tbi
03b777e22fde02a18b2f523ff327e2f2 *tests/correct.Rdata
e95e6420f0b8bdf2306dc87628a2c9b5 *vcf/1000g.phase1.20110521.CFH.var.anno.vcf.gz
8e1e8a6b0944b906b913d315aa4f8fe0 *vcf/1000g.phase1.20110521.CFH.var.anno.vcf.gz.tbi
30b34178034c34db61e46eeaf01fe863 *vcf/all.anno.filtered.extract.bcf.gz
da2e7fb5756f4e027cf076ddcdb5eade *vcf/all.anno.filtered.extract.bcf.gz.bci
df429b3d6e2d5e0e6bbbcb795430d2cd *vcf/all.anno.filtered.extract.headerFixed.bcf.gz
dadea91bf7fa4c1e93edf1c7cb08f7c2 *vcf/all.anno.filtered.extract.headerFixed.bcf.gz.scIdx
ca32db876ce78d2081fca12e46e1c115 *vcf/all.anno.filtered.extract.headerFixed.vcf.gz
a30627f5fed64983816d94ff2f90369c *vcf/all.anno.filtered.extract.vcf.gz
52e0fe3425c2c050045193e14a360262 *vcf/all.anno.filtered.extract.vcf.gz.scIdx
eebfb3d8260a7def9f29034931b7f9e2 *vcf/all.anno.filtered.extract.vcf.gz.tbi
9cc4f5122bb2e3b0b6b519f8c00d4fd7 *vcf/refFlat_hg19_6col.txt.gz
