createSingleChromosomeBCFIndex {seqminer}R Documentation

Create a single chromosome index

Description

Create a single chromosome index

Usage

createSingleChromosomeBCFIndex(fileName, indexFileName = NULL)

Arguments

fileName

character, represents an input BCF file (Bgzipped, with Tabix index)

indexFileName

character, by default, create 'fileName'.scIdx

Value

indexFileName if success, or NULL is failed

See Also

http://zhanxw.com/seqminer/ for online manual and examples

Examples

fileName = system.file("vcf/all.anno.filtered.extract.headerFixed.bcf.gz", package = "seqminer")
cfh <- createSingleChromosomeBCFIndex(fileName)
[Package seqminer version 8.0 Index]