R: Write covariance association statistics files.

rvmeta.writeCovData {seqminer} | R Documentation

## Write covariance association statistics files.

### Description

Write covariance association statistics files.

### Usage

    rvmeta.writeCovData(rvmetaData, outName)

### Arguments

`rvmetaData` | a list vector. It's usually read by rvmeta.readDataByRange or rvmeta.readDataByGene function
`outName` | character, a text indicating output file prefix

### Value

TRUE only if succeed

### See Also

http://zhanxw.com/seqminer/ for online manual and examples

### Examples

    scoreFileName = system.file("rvtests/rvtest.MetaScore.assoc.anno.gz", package = "seqminer")
    covFileName = system.file("rvtests/rvtest.MetaCov.assoc.gz", package = "seqminer")
    geneFile = system.file("vcf/refFlat_hg19_6col.txt.gz", package = "seqminer")
    cfh <- rvmeta.readDataByRange(scoreFileName, covFileName, "1:196621007-196716634")

    outFile <- file.path(tempdir(), "cfh.MetaCov.assoc.gz")
    rvmeta.writeCovData(cfh, outFile)
    cat('Outputted MetaCov file are in the temp directory:', outFile, '\n')

[Package seqminer version 8.0 Index]