R: To get the count of existing lists and all their ranks on...

alllistranks {seqinr} | R Documentation

## To get the count of existing lists and all their ranks on server

### Description

This is a low level function to get the total number of list and all their ranks in an opened database.

### Usage

    alllistranks(socket = autosocket(), verbose = FALSE)
    alr(socket = autosocket(), verbose = FALSE)

### Arguments

`socket` | an object of class `sockconn` connecting to a remote ACNUC database (default is a socket to the last opened database).
`verbose` | if `TRUE`, verbose mode is on

### Details

This low level function is usually not used directly by the user.

### Value

A list with two components:

`count` | count of existing lists
`rank` | their rank

### Author(s)

J.R. Lobry

### References

`citation("seqinr")`

### See Also

`choosebank`, `query`

### Examples

     ## Not run: # Need internet connection
     choosebank("emblTP")
     tmp1 <- query("tmp1", "sp=Borrelia burgdorferi", virtual = TRUE)
     tmp2 <- query("tmp2", "sp=Borrelia burgdorferi", virtual = TRUE)
     tmp3 <- query("tmp3", "sp=Borrelia burgdorferi", virtual = TRUE)
     (result <- alllistranks())
     stopifnot(result$count == 3)   # Three ACNUC lists
     stopifnot(result$ranks == 2:4) # Starting at rank 2
     #
     # Summay of current lists defined on the ACNUC server:
     #
     sapply(result$ranks, getliststate)
     closebank()

    ## End(Not run)

[Package seqinr version 3.4-5 Index]