R: Asks for information about an ACNUC list of specified rank

getliststate {seqinr} | R Documentation

## Asks for information about an ACNUC list of specified rank

### Description

Reply gives the type of list, its name, the number of elements it contains, and, for sequence lists, says whether the list contains only parent seqs (locus=T).

### Usage

    getliststate(lrank, socket = autosocket())
    gls(lrank, socket = autosocket())
    gln(lrank, ...)

### Arguments

`lrank` | the name of the ACNUC list to modify
`socket` | an object of class `sockconn` connecting to a remote ACNUC database (default is a socket to the last opened database).
`...` | arguments passed to getliststate

### Value

NA in case of problem and an warning is issued. When there is no problem a list with the following 4 components:

`type` | string. Type of ACNUC list (SQ, KW, SP)
`name` | string. ACNUC list name
`count` | numeric. Number of elements in ACNUC list
`locus` | logical. For ACNUC sequence lists TRUE means that the list contains only parent sequences. NA otherwise.

`gln` is a shortcut for `getliststate(lrank, ...)$name`

### Author(s)

J.R. Lobry

### References

http://doua.prabi.fr/databases/acnuc.html

`citation("seqinr")`

### See Also

`choosebank`, `query`, `alr`, `glr`

### Examples

    ## Not run:
      ### Need internet connection
      choosebank("emblTP")
      mylist <- query("mylist", "sp=felis catus et t=cds", virtual=TRUE)
      getliststate(glr("mylist")) # SQ, MYLIST, 603, FALSE
      gln(glr("mylist")) # MYLIST (upper case letters on server)
      closebank()

    ## End(Not run)

[Package seqinr version 3.4-5 Index]