R: Generic function to get keywords associated to sequences

getKeyword {seqinr} | R Documentation

## Generic function to get keywords associated to sequences

### Description

Get keywords from an ACNUC server.

### Usage

    getKeyword(object, ...)
    ## S3 method for class 'SeqAcnucWeb'
    getKeyword(object, ..., socket = autosocket())

### Arguments

`object` | an object of the class `SeqAcnucWeb`, or a list of them, or the object resulting from `query`
`socket` | an object of class `sockconn` connecting to a remote ACNUC database (default is a socket to the last opened database by `choosebank`).
`...` | further arguments passed to or from other methods

### Value

`getKeyword` returns a vector of strings containing the keyword(s) associated to a sequence.

### Author(s)

D. Charif, J.R. Lobry, L. Palmeira

### References

`citation("seqinr")`

### See Also

`SeqAcnucWeb`

### Examples

    #
    # List all available methods for getKeyword generic function:
    #
       methods(getKeyword)
    #
    # Example of keyword extraction from an ACNUC server:
    #
      ## Not run:
      # Need internet connection
      choosebank("emblTP")
      fc<-query("fc", "sp=felis catus et t=cds et o=mitochondrion")
      getKeyword(fc$req[[1]])
      # Should be:
      # [1] "DIVISION ORG" "RELEASE 62"   "CYTOCHROME B" "SOURCE"       "CDS"
      closebank()

    ## End(Not run)

[Package seqinr version 3.4-5 Index]