R: 999 coding sequences from E. coli

ec999 {seqinr} | R Documentation

## 999 coding sequences from E. coli

### Description

This dataset contains 999 coding sequences from the Escherichia coli chromosome

### Usage

    data(ec999)

### Format

List of 999 vectors of characters, one for each coding sequence.

ECFOLE.FOLE

  chr [1:672] "A" "T" "G" "C" ...

ECMSBAG.MSBA

  chr [1:1749] "A" "T" "G" "C" ...

ECNARZYW-C.NARV

  chr [1:681] "A" "T" "G" "A" ...

...

  ... TRUNCATED ...

XYLEECOM.MALK

  chr [1:1116] "A" "T" "G" "G" ...

XYLEECOM.LAMB

  chr [1:1341] "A" "T" "G" "A" ...

XYLEECOM.MALM

  chr [1:921] "A" "T" "G" "A" ...

### References

Lobry, J.R., Gautier, C. (1994) Hydrophobicity, expressivity and aromaticity are the major trends of amino-acid usage in 999 Escherichia coli chromosome-encode genes. Nucleic Acids Research,22:3174-3180.

`citation("seqinr")`

### Examples

    data(ec999)
    #
    # How to export sequences in a FASTA file:
    #
    write.fasta(ec999, names(ec999), file = "ec999.ffn")

[Package seqinr version 3.4-5 Index]