R: Save sequence names or accession numbers into a file

savelist {seqinr} | R Documentation

## Save sequence names or accession numbers into a file

### Description

This function retrieves all sequence names or all accession number from an ACNUC list and saves them into a file.

### Usage

    savelist(lrank, type = c("N", "A"),
                         filename = paste(gln(lrank), ifelse(type == "N", "mne", "acc"),
    		     sep = "."),socket = autosocket(), warnme = TRUE)

### Arguments

`lrank` | the rank of the ACNUC list to consider.
`type` | use "N" for sequence names (mnemonics) and "A" for accession numbers. Default is "N".
`filename` | a string of character giving the name of the file to save results.
`socket` | an object of class `sockconn` connecting to a remote ACNUC database (default is a socket to the last opened database).
`warnme` | if TRUE a message is issued on the console when complete.

### Value

none.

### Author(s)

J.R. Lobry

### References

http://doua.prabi.fr/databases/acnuc.html

`citation("seqinr")`

### See Also

`choosebank`, `query`, `glr` to get a list rank from its name, `clfcd` for the inverse operation of `savelist`

### Examples

    ## Not run:
      ### Need internet connection
      choosebank("emblTP")
      mylist <- query("mylist", "sp=felis catus et t=cds", virtual=TRUE)
      savelist(glr("mylist"))
      # 603 sequence mnemonics written into file: MYLIST.mne
      savelist(glr("mylist"), type = "A")
      # 603 sequence accession numbers written into file: MYLIST.acc

    ## End(Not run)

[Package seqinr version 3.4-5 Index]