R: Conversion of a GenBank format file into a glimmer-like one....

gbk2g2.euk {seqinr} | R Documentation

## Conversion of a GenBank format file into a glimmer-like one. Eukaryotic version.

### Description

This function reads a file in GenBank format and converts the features corresponding to CDS (Coding Sequences) into a format similar to glimmer program output. This function is specifically made for eukaryotic sequences, i.e. with introns.

### Usage

    gbk2g2.euk(gbkfile = system.file("sequences/ame1.gbk", package ="seqinr"),
    g2.coord = "g2.coord")

### Arguments

`gbkfile` | The name of the GenBank file
`g2.coord` | The name of the output file

### Details

This function returns the coordinates of the exons annotated in the GenBank format file.

### Value

A data frame with three columns will be written to the `g2.coord` file. The first column corresponds to the name of the gene, given in the GenBank file through the `/gene` feature. The second and third column contain the start and the stop position of the exon.

### Author(s)

J.R. Lobry, A. Necşulea

### References

`citation("seqinr")`

### See Also

`oriloc`, `gbk2g2`

### Examples

     ## Not run:  gbk2g2.euk()

[Package seqinr version 3.4-5 Index]