get_nz_median {sctransform}R Documentation

Get median of non zero UMIs from a count matrix using a subset of genes (slow)

Description

Get median of non zero UMIs from a count matrix using a subset of genes (slow)

Usage

get_nz_median(umi, genes = NULL)

Arguments

umi

Count matrix

genes

List of genes to calculate statistics. Default is NULL which returns the non-zero median using all genes

Value

A numeric value representing the median of non-zero entries from the UMI matrix


[Package sctransform version 0.3.3 Index]