R: Translate multilevel segmentation into a dendrogram, with the...

multi2dend {sccore} | R Documentation

## Translate multilevel segmentation into a dendrogram, with the lowest level of the dendrogram listing the cells

### Description

Translate multilevel segmentation into a dendrogram, with the lowest level of the dendrogram listing the cells

### Usage

    multi2dend(cl, counts, deep = FALSE, dist = "cor")

### Arguments

`cl` | igraph communities object, returned from igraph community detection functions
`counts` | dgCmatrix of counts
`deep` | boolean If TRUE, take (cl$memberships[1,]). Otherwise, uses as.integer(membership(cl)) (default=FALSE)
`dist` | Distance metric used (default='cor'). Eiether 'cor' for the correlation distance in log10 space, or 'JS' for the Jensen–Shannon distance metric (i.e. the square root of the Jensen–Shannon divergence)

### Value

resulting dendrogram

[Package sccore version 1.0.1 Index]