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A C E F G I L P R S T U W misc
| add.dosing | Add dosing to eventTable |
| add.sampling | Add sampling to eventTable |
| as.character.rxEvid | EVID formatting for tibble and other places. |
| as.character.rxRateDur | Creates a rxRateDur object |
| as.data.table.rxEt | Convert an event table to a data.table |
| as.et | Coerce object to data.frame |
| as.et.default | Coerce object to data.frame |
| as.rxEvid | EVID formatting for tibble and other places. |
| as.rxRateDur | Creates a rxRateDur object |
| as_tibble.rxEt | Convert to tbl |
| c.rxEvid | EVID formatting for tibble and other places. |
| c.rxRateDur | EVID formatting for tibble and other places. |
| coef.RxODE | Return the RxODE coefficients |
| cvPost | Sample a covariance Matrix from the Posterior Inverse Wishart distribution. |
| et | Event Table Function |
| et.default | Event Table Function |
| et.RxODE | Event Table Function |
| et.rxParams | Event Table Function |
| et.rxSolve | Event Table Function |
| etExpand | Expand additional doses |
| etRbind | Combining event tables |
| etRep | Repeat an RxODE event table |
| etSeq | Sequence of event tables |
| eventTable | Create an event table object |
| expit | logit and inverse logit (expit) functions |
| forderForceBase | Force using base order for RxODE radix sorting |
| format.rxEvid | EVID formatting for tibble and other places. |
| format.rxRateDur | EVID formatting for tibble and other places. |
| gammap | Gammap: normalized lower incomplete gamma function |
| gammapDer | gammapDer: derivative of gammap |
| gammapInv | gammapInv and gammapInva: Inverses of normalized gammap function |
| gammapInva | gammapInv and gammapInva: Inverses of normalized gammap function |
| gammaq | Gammaq: normalized upper incomplete gamma function |
| gammaqInv | gammaqInv and gammaqInva: Inverses of normalized gammaq function |
| gammaqInva | gammaqInv and gammaqInva: Inverses of normalized gammaq function |
| genShinyApp.template | Generate an example (template) of a dosing regimen shiny app |
| geom_amt | Dosing/Amt geom/stat |
| geom_cens | Censoring geom/stat |
| getRxThreads | Get/Set the number of threads that RxODE uses |
| guide_none | Empty Guide |
| invWR1d | One correlation sample from the Inverse Wishart distribution |
| is.rxEt | Check to see if this is an rxEt object. |
| is.rxSolve | Check to see if this is an rxSolve object. |
| logit | logit and inverse logit (expit) functions |
| logitNormInfo | logit and inverse logit (expit) functions |
| lowergamma | lowergamma: upper incomplete gamma function |
| phi | Cumulative distribution of standard normal |
| pillar_shaft.rxEvid | EVID formatting for tibble and other places. |
| pillar_shaft.rxRateDur | Creates a rxRateDur object |
| predict.rxEt | Solving & Simulation of a ODE/solved system (and solving options) equation |
| predict.RxODE | Solving & Simulation of a ODE/solved system (and solving options) equation |
| predict.rxParams | Solving & Simulation of a ODE/solved system (and solving options) equation |
| predict.rxSolve | Solving & Simulation of a ODE/solved system (and solving options) equation |
| print.rxEvid | EVID formatting for tibble and other places. |
| print.RxODE | Print information about the RxODE object. |
| probit | probit and inverse probit functions |
| probitInv | probit and inverse probit functions |
| probitNormInfo | logit and inverse logit (expit) functions |
| rbind.rxEt | Combining event tables |
| rep.rxEt | Repeat an RxODE event table |
| rinvchisq | Scaled Inverse Chi Squared distribution |
| rLKJ1 | One correlation sample from the LKJ distribution |
| rxAddReturn | Add a return statment to a function. |
| rxAllowUnload | Allow unloading of dlls |
| rxAssignPtr | Assign pointer based on model variables |
| rxbeta | Simulate beta variable from threefry generator |
| rxbinom | Simulate Binomial variable from threefry generator |
| rxcauchy | Simulate Cauchy variable from threefry generator |
| rxChain | rxChain Chain or add item to solved system of equations |
| rxchisq | Simulate chi-squared variable from threefry generator |
| rxClean | Cleanup anonymous DLLs by unloading them |
| rxCompile | Compile a model if needed |
| rxCompile.character | Compile a model if needed |
| rxCompile.rxDll | Compile a model if needed |
| rxCompile.rxModelVars | Compile a model if needed |
| rxCompile.RxODE | Compile a model if needed |
| rxControl | Solving & Simulation of a ODE/solved system (and solving options) equation |
| rxCores | Get/Set the number of threads that RxODE uses |
| rxCreateCache | This will create the cache directory for RxODE to save between sessions |
| rxD | Add to RxODE's derivative tables |
| rxDelete | Delete the DLL for the model |
| rxDerived | Calculate derived parameters for the 1-, 2-, and 3- compartment linear models. |
| rxDfdy | Jacobian and parameter derivatives |
| rxEvid | EVID formatting for tibble and other places. |
| rxexp | Simulate exponential variable from threefry generator |
| rxf | Simulate F variable from threefry generator |
| rxFromSE | RxODE to symengine environment |
| rxFun | Add user function to RxODE |
| rxgamma | Simulate gamma variable from threefry generator |
| rxGenSaem | Generate pred-only SAEM RxODE model |
| rxgeom | Simulate geometric variable from threefry generator |
| rxGetLin | Get the linear compartment model true function |
| rxGetRxODE | Get RxODE model from object |
| rxHtml | Format rxSolve and related objects as html. |
| rxHtml.rxSolve | Format rxSolve and related objects as html. |
| rxIndLinState | Set the preferred factoring by state |
| rxIndLinStrategy | This sets the inductive linearization strategy for matrix building |
| rxInv | Invert matrix using RcppArmadillo. |
| rxIsCurrent | Checks if the RxODE object was built with the current build |
| rxLhs | Left handed Variables |
| rxLock | Lock/unlocking of RxODE dll file |
| rxNorm | Get the normalized model |
| rxnorm | Simulate random normal variable from threefry/vandercorput generator |
| rxnormV | Simulate random normal variable from threefry/vandercorput generator |
| RxODE | Create an ODE-based model specification |
| rxOptExpr | Optimize RxODE for computer evaluation |
| rxParam | Parameters specified by the model |
| rxParams | Parameters specified by the model |
| rxParams.rxEt | Parameters specified by the model |
| rxParams.RxODE | Parameters specified by the model |
| rxParams.rxSolve | Parameters specified by the model |
| rxPkg | Creates a package from compiled RxODE models |
| rxpois | Simulate random Poisson variable from threefry generator |
| rxPp | Simulate a from a Poisson process |
| rxProgress | RxODE progress bar functions |
| rxProgressAbort | RxODE progress bar functions |
| rxProgressStop | RxODE progress bar functions |
| rxRandNV | Create a random "normal" matrix using vandercorput generator |
| rxRateDur | Creates a rxRateDur object |
| rxReservedKeywords | A list and description of Rode supported reserved keywords |
| rxRmFun | Add user function to RxODE |
| rxRmvn | Simulate from a (truncated) multivariate normal |
| rxS | Load a model into a symengine environment |
| rxSetIni0 | Set Initial conditions to time zero instead of the first observed/dosed time |
| rxSetProd | Defunct setting of product |
| rxSetProgressBar | Set timing for progress bar |
| rxSetSum | Defunct setting of sum |
| rxShiny | Use Shiny to help develop an RxODE model |
| rxShiny.default | Use Shiny to help develop an RxODE model |
| rxShiny.rxSolve | Use Shiny to help develop an RxODE model |
| rxSimThetaOmega | Simulate Parameters from a Theta/Omega specification |
| rxSolve | Solving & Simulation of a ODE/solved system (and solving options) equation |
| rxSolve.default | Solving & Simulation of a ODE/solved system (and solving options) equation |
| rxStack | Stack a solved object for things like ggplot |
| rxState | State variables |
| rxSumProdModel | Recast model in terms of sum/prod |
| rxSupportedFuns | Get list of supported functions |
| rxSuppressMsg | Respect suppress messages |
| rxSymInvChol | Get Omega^-1 and derivatives |
| rxSyncOptions | Sync options with RxODE variables |
| rxSyntaxFunctions | A list and description of Rode supported syntax functions |
| rxt | Simulate student t variable from threefry generator |
| rxTempDir | Get the RxODE temporary directory |
| rxTest | Validate RxODE This allows easy validation/qualification of nlmixr by running the testing suite on your system. |
| rxTheme | rxTheme is the RxODE theme for plots |
| rxTick | RxODE progress bar functions |
| rxToSE | RxODE to symengine environment |
| rxTrans | Translate the model to C code if needed |
| rxTrans.character | Translate the model to C code if needed |
| rxTrans.default | Translate the model to C code if needed |
| rxunif | Simulate uniform variable from threefry generator |
| rxUnloadAll | Unloads all RxODE compiled DLLs |
| rxUnlock | Lock/unlocking of RxODE dll file |
| rxUse | Use model object in your package |
| rxValidate | Validate RxODE This allows easy validation/qualification of nlmixr by running the testing suite on your system. |
| rxweibull | Simulate Weibull variable from threefry generator |
| rxWinSetup | Setup Windows components for RxODE |
| seq.rxEt | Sequence of event tables |
| setRxThreads | Get/Set the number of threads that RxODE uses |
| simulate.RxODE | Solving & Simulation of a ODE/solved system (and solving options) equation |
| simulate.rxParams | Solving & Simulation of a ODE/solved system (and solving options) equation |
| simulate.rxSolve | Solving & Simulation of a ODE/solved system (and solving options) equation |
| solve.rxEt | Solving & Simulation of a ODE/solved system (and solving options) equation |
| solve.RxODE | Solving & Simulation of a ODE/solved system (and solving options) equation |
| solve.rxParams | Solving & Simulation of a ODE/solved system (and solving options) equation |
| solve.rxSolve | Solving & Simulation of a ODE/solved system (and solving options) equation |
| stat_amt | Dosing/Amt geom/stat |
| stat_cens | Censoring geom/stat |
| summary.RxODE | Print expanded information about the RxODE object. |
| type_sum.rxEvid | EVID formatting for tibble and other places. |
| type_sum.rxRateDur | Creates a rxRateDur object |
| update.rxSolve | Solving & Simulation of a ODE/solved system (and solving options) equation |
| uppergamma | uppergamma: upper incomplete gamma function |
| write.template.server | Generate an example (template) of a dosing regimen shiny app |
| write.template.ui | Generate an example (template) of a dosing regimen shiny app |
| +.solveRxDll | rxChain Chain or add item to solved system of equations |
| .rxFinalizeInner | Finalize inner RxODE based on symengine saved info |
| .rxFinalizePred | Finalize RxODE pred based on symengine saved info |
| .rxFromSE | RxODE to symengine environment |
| .rxGenEBE | Generate pieces for EBE only problem |
| .rxGenEtaS | Generate the ETA sensitivities for FO related methods |
| .rxGenFoce | Generate FOCE without interaction |
| .rxGenFocei | Generate pieces for FOCEi inner problem |
| .rxGenFunState | Get the state information for the current model |
| .rxGenHdEta | Generate the d(err)/d(eta) values for FO related methods |
| .rxGenPred | Generate Augmented pred/err RxODE model |
| .rxRmPrint | Remove print statements |
| .rxToSE | RxODE to symengine environment |
| .rxWinRtoolsPath | Setup Rtools path |
| .rxWithOptions | Temporarily set options then restore them while running code |
| .rxWithWd | Temporarily set options then restore them while running code |
| .setWarnIdSort | Turn on/off warnings for ID sorting. |
| [.rxEvid | EVID formatting for tibble and other places. |
| [.rxRateDur | Creates a rxRateDur object |
| [[.rxEvid | EVID formatting for tibble and other places. |
| [[.rxRateDur | Creates a rxRateDur object |