R: Detect and Remove Unwanted Variation using Negative Controls

# Detect and Remove Unwanted Variation using Negative Controls

## Documentation for package ‘ruv’ version 0.9.6

- DESCRIPTION file.

## Help Pages

ruv-package | Detect and Remove Unwanted Variation using Negative Controls
getK | Get K
get_empirical_variances | Get empirical variances
inputcheck1 | Input Check One
invvar | Inverse Method Variances
randinvvar | (Randomization) Inverse Method Variances
residop | Residual Operator
ruv | Detect and Remove Unwanted Variation using Negative Controls
RUV1 | RUV-1
RUV2 | Remove Unwanted Variation, 2-step
RUV4 | Remove Unwanted Variation, 4-step
RUVinv | Remove Unwanted Variation, inverse method
RUVrinv | Remove Unwanted Variation, ridged inverse method
sigmashrink | Empirical Bayes shrinkage estimate of sigma^2
variance_adjust | Adjust Estimated Variances