R: Strip OTT ids from tip labels

strip_ott_ids {rotl} | R Documentation

## Strip OTT ids from tip labels

### Description

Strip OTT ids from tip labels

### Usage

    strip_ott_ids(tip_labels, remove_underscores = FALSE)

### Arguments

`tip_labels` | a character vector containing tip labels (most likely the `tip.label` element from a tree returned by `tol_induced_subtree`
`remove_underscores` | logical (defaults to FALSE). If set to TRUE underscores in tip labels are converted to spaces

### Value

A character vector containing the contents of `tip_labels` with any OTT ids removed.

### Examples

    ## Not run:
    genera <- c("Perdix", "Setophaga", "Cinclus", "Struthio")
    tr <- tol_induced_subtree(ott_ids=c(102710, 285198, 267845, 292466))
    tr$tip.label %in% genera
    tr$tip.label <- strip_ott_ids(tr$tip.label)
    tr$tip.label %in% genera

    ## End(Not run)

[Package rotl version 3.0.4 Index]