#NEXUS
[written Tue May 29 18:24:39 PDT 2007 by Mesquite  version 1.06 (build g97) at cnidaria-1347.ucdavis.edu/169.237.66.185]

BEGIN TAXA;
	DIMENSIONS NTAX=18;
	TAXLABELS
		Myrmecocystuscfnavajo Myrmecocystus_creightoni Myrmecocystusdepilis Myrmecocystuskathjuli Myrmecocystuskennedyi Myrmecocystusmendax Myrmecocystusmexicanus Myrmecocystusmimicus Myrmecocystusnavajo Myrmecocystusnequazcatl Myrmecocystusplacodops Myrmecocystusromainei Myrmecocystussemirufus Myrmecocystussnellingi Myrmecocystustenuinodis Myrmecocystustestaceus Myrmecocystuswheeleri Myrmecocystusyuma 
	;

END;


BEGIN CHARACTERS;
	TITLE  Foraging;
	DIMENSIONS  NCHAR=2;
	FORMAT DATATYPE = STANDARD GAP = - MISSING = ? SYMBOLS = "  0 1 2";
	CHARSTATELABELS 
		1 time_period /  diurnal crepuscular nocturnal, 2 subgenus /  Endiodioctes Eremnocystus Myrmecocystus ; 
	MATRIX
	Myrmecocystuscfnavajo   22

	Myrmecocystus_creightoni  11

	Myrmecocystusdepilis     00

	Myrmecocystuskathjuli    00

	Myrmecocystuskennedyi    00

	Myrmecocystusmendax      00

	Myrmecocystusmexicanus   22

	Myrmecocystusmimicus     00

	Myrmecocystusnavajo      22

	Myrmecocystusnequazcatl  00

	Myrmecocystusplacodops   00

	Myrmecocystusromainei    00

	Myrmecocystussemirufus   00

	Myrmecocystussnellingi   11

	Myrmecocystustenuinodis  11

	Myrmecocystustestaceus   12

	Myrmecocystuswheeleri    00

	Myrmecocystusyuma        11


;

END;

BEGIN TREES;
	TRANSLATE
		1 Myrmecocystuscfnavajo,
		2 Myrmecocystus_creightoni,
		3 Myrmecocystusdepilis,
		4 Myrmecocystuskathjuli,
		5 Myrmecocystuskennedyi,
		6 Myrmecocystusmendax,
		7 Myrmecocystusmexicanus,
		8 Myrmecocystusmimicus,
		9 Myrmecocystusnavajo,
		10 Myrmecocystusnequazcatl,
		11 Myrmecocystusplacodops,
		12 Myrmecocystusromainei,
		13 Myrmecocystussemirufus,
		14 Myrmecocystussnellingi,
		15 Myrmecocystustenuinodis,
		16 Myrmecocystustestaceus,
		17 Myrmecocystuswheeleri,
		18 Myrmecocystusyuma;
	TREE bestML = (((((((((13:1.724765,11:1.724765):2.926053,6:4.650818):0.689044,(4:1.08387,17:1.08387):4.255993):0.198842,((8:2.708942,3:2.708942):2.027251,((12:2.193845,10:2.193845):2.257581,18:4.451425):0.284767):0.802512):0.506099,5:6.044804):4.524387,2:10.569191):0.836689,(14:2.770378,15:2.770378):8.635503):0.89482,16:12.300701):1.699299,(7:5.724923,(1:2.869547,9:2.869547):2.855375):8.275077);

END;


BEGIN ASSUMPTIONS;
	TYPESET * UNTITLED  (CHARACTERS = Foraging)  =  unord:  1 -  2;
END;

BEGIN MESQUITECHARMODELS;
	ProbModelSet * UNTITLED  (CHARACTERS = 'Matrix in file "treepluscharV01.nex"')  =  Browniandefault:  1 -  32;
ProbModelSet * UNTITLED  (CHARACTERS = Foraging)  =  'Mk1 (est.)':  1 -  2;
END;

Begin MESQUITE;
		MESQUITESCRIPTVERSION 2;
		TITLE AUTO;
		tell ProjectCoordinator;
		getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			setID 0 9015005506118934442;
		endTell;
		getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters;
		tell It;
			setID 0 2565950173085067248;
			checksum 0 389122022;
			setID 1 1161953040649633474;
			checksum 1 3582198254;
		endTell;
		getEmployee  #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord;
		tell It;
			showDataWindow #2565950173085067248 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker;
			tell It;
				getWindow;
				tell It;
					setSize 420 280;
					setLocation 400 156;
					setFont SanSerif;
					setFontSize 10;
					onInfoBar;
					setExplanationSize 30;
					setAnnotationSize 20;
					setFontIncAnnot 0;
					setFontIncExp 0;
					getToolPalette;
					tell It;
					endTell;
					setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow;
					colorCells  #mesquite.charMatrices.NoColor.NoColor;
					setBackground White;
					toggleShowNames on;
					toggleTight off;
					toggleShowChanges on;
					toggleSeparateLines off;
					toggleShowStates on;
					toggleAutoWithCharNames on;
					toggleShowDefaultCharNames off;
					toggleConstrainCW on;
					toggleBirdsEye off;
					toggleColorsPanel off;
					birdsEyeWidth 2;
					toggleLinkedScrolling on;
					toggleScrollLinkedTables off;
				endTell;
				showWindow;
				getWindow;
				tell It;
					forceAutosize;
				endTell;
				getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel;
				tell It;
					togglePanel off;
				endTell;
				getEmployee #mesquite.charMatrices.ColorCells.ColorCells;
				tell It;
					setColor Red;
					removeColor off;
				endTell;
			endTell;
			showDataWindow #1161953040649633474 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker;
			tell It;
				getWindow;
				tell It;
					getTable;
					tell It;
						rowNamesWidth 232;
					endTell;
					setSize 798 748;
					setLocation 348 22;
					setFont SanSerif;
					setFontSize 10;
					onInfoBar;
					setExplanationSize 30;
					setAnnotationSize 20;
					setFontIncAnnot 0;
					setFontIncExp 0;
					getToolPalette;
					tell It;
						setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam;
					endTell;
					setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam;
					colorCells  #mesquite.charMatrices.NoColor.NoColor;
					setBackground White;
					toggleShowNames on;
					toggleTight off;
					toggleShowChanges on;
					toggleSeparateLines off;
					toggleShowStates on;
					toggleAutoWithCharNames on;
					toggleShowDefaultCharNames off;
					toggleConstrainCW on;
					toggleBirdsEye off;
					toggleColorsPanel off;
					birdsEyeWidth 2;
					toggleLinkedScrolling on;
					toggleScrollLinkedTables off;
				endTell;
				showWindow;
				getWindow;
				tell It;
					forceAutosize;
				endTell;
				getEmployee #mesquite.categ.StateNamesEditor.StateNamesEditor;
				tell It;
					makeWindow;
					tell It;
						setSize 314 400;
						setLocation 60 10;
						setFont SanSerif;
						setFontSize 10;
						onInfoBar;
						setExplanationSize 30;
						setAnnotationSize 20;
						setFontIncAnnot 0;
						setFontIncExp 0;
						getToolPalette;
						tell It;
							setTool mesquite.categ.StateNamesEditor.StateNamesWindow.ibeam;
						endTell;
						rowsAreCharacters on;
						toggleConstrainChar on;
						toggleConstrainCharNum 3;
						togglePanel off;
					endTell;
					showWindow;
				endTell;
				getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel;
				tell It;
					togglePanel off;
				endTell;
				getEmployee #mesquite.charMatrices.ColorCells.ColorCells;
				tell It;
					setColor Red;
					removeColor off;
				endTell;
				getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector;
				tell It;
					autotabOff;
				endTell;
			endTell;
		endTell;
		getEmployee  #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord;
		tell It;
			makeTreeWindow #9015005506118934442  #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker;
			tell It;
				setTreeSource  #mesquite.trees.StoredTrees.StoredTrees;
				tell It;
					setTreeBlock 1;
					toggleUseWeights off;
				endTell;
				setAssignedID 630.1180487973731.4514395117633566598;
				getTreeWindow;
				tell It;
					setSize 520 400;
					setLocation 60 10;
					setFont SanSerif;
					setFontSize 10;
					onInfoBar;
					setExplanationSize 30;
					setAnnotationSize 20;
					setFontIncAnnot 0;
					setFontIncExp 0;
					getToolPalette;
					tell It;
					endTell;
					setActive;
					getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator;
				tell It;
					suppress;
					setTreeDrawer  #mesquite.trees.DiagonalDrawTree.DiagonalDrawTree;
					tell It;
						setEdgeWidth 12;
						orientUp;
						getEmployee #mesquite.trees.NodeLocsStandard.NodeLocsStandard;
						tell It;
							stretchToggle off;
							branchLengthsToggle off;
							toggleScale on;
							toggleCenter off;
							toggleEven off;
							namesAngle ?;
						endTell;
					endTell;
					setBackground White;
					setBranchColor Black;
					showNodeNumbers off;
					labelBranchLengths off;
					desuppress;
					getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames;
					tell It;
						setColor Black;
						toggleColorPartition on;
						toggleShadePartition off;
						toggleNodeLabels on;
						toggleShowNames on;
					endTell;
				endTell;
					setTreeNumber 1;
					useSuggestedSize on;
					toggleTextOnTree off;
					newAssistant  #mesquite.ancstates.TraceCharacterHistory.TraceCharacterHistory;
				tell It;
					suspend ;
					setDisplayMode  #mesquite.ancstates.ShadeStatesOnTree.ShadeStatesOnTree;
					tell It;
						toggleLabels off;
					endTell;
					setHistorySource  #mesquite.ancstates.RecAncestralStates.RecAncestralStates;
					tell It;
						getCharacterSource  #mesquite.charMatrices.CharSrcCoordObed.CharSrcCoordObed;
						tell It;
							setCharacterSource #mesquite.charMatrices.StoredCharacters.StoredCharacters;
							tell It;
								setDataSet #1161953040649633474;
							endTell;
						endTell;
						setMethod  #mesquite.parsimony.ParsAncestralStates.ParsAncestralStates;
						tell It;
							setModelSource  #mesquite.parsimony.CurrentParsModels.CurrentParsModels;
						endTell;
					endTell;
					setCharacter 1;
					toggleShowLegend on;
					toggleGray off;
					toggleWeights on;
					setInitialOffsetX -162;
					setInitialOffsetY -177;
					setLegendWidth 142;
					setLegendHeight 177;
					resume ;
				endTell;
				endTell;
				showWindow;
				getEmployee #mesquite.ornamental.BranchNotes.BranchNotes;
				tell It;
					setAlwaysOn off;
				endTell;
				getEmployee #mesquite.trees.ColorBranches.ColorBranches;
				tell It;
					setColor Red;
					removeColor off;
				endTell;
			endTell;
		endTell;
		endTell;
end;

begin brownie;
taxset all=1-18;
end;
