Extract subsets of refGenome by gene-ID.

Description

The function takes objects derived from refGenome or refJunctions and returns a subset in which gene_name matches the given values. The returned object is of the same class as the given object.

Usage

extractByGeneId(object,geneids,...)

Arguments

Value

Same class as object

Author(s)

Wolfgang Kaisers

Examples

# + + + + + + + + + + + + + + + + + + #
# A) Extract from Genome
# + + + + + + + + + + + + + + + + + + #
ensfile<-system.file("extdata", 
                    "hs.ensembl.62.small.RData", package="refGenome")
ens<-loadGenome(ensfile)
ddx<-extractByGeneId(ens,"ENSG00000223972")
ddx
# + + + + + + + + + + + + + + + + + + #
# B) Extract from splice junctions
# + + + + + + + + + + + + + + + + + + #
junc<-getSpliceTable(ens)
ddx<-extractByGeneId(junc,"ENSG00000223972")
ddx