R: Plot Tiles for One Data Track

RCircos.Tile.Plot {RCircos} | R Documentation

## Plot Tiles for One Data Track

### Description

Draw one track of Tiles. RCircos core components and graphics device must be initialized before drawing.

### Usage

    RCircos.Tile.Plot(tile.data=NULL, track.num=NULL,
        side= c("in", "out"), inside.pos=NULL, outside.pos=NULL,
        genomic.columns=3, is.sorted=TRUE)

### Arguments

`tile.data` | A data frame with the three columns as chromosome names, start position and end position of each data point. Other column(s) is optional.
`track.num` | Non-negative integer, representing the ordinal number of the plot track where the lines will be plotted.
`side` | Character vector, either "in" or "out", representing the position related to chromosome ideogram.
`inside.pos` | Non-negative numeric, inside position (relative to the centre of plot area) of the track .
`outside.pos` | Non-negative numeric, outside position (relative to the centre of plot area) of the track.
`genomic.columns` | Non-negative interger. Must be 3 for tile plot.
`is.sorted` | Logic, whether the data is sorted by chromosome names and start positions.

### Author(s)

Henry Zhang

### Examples

    ## Not run:
    library(RCircos);
    data(UCSC.HG19.Human.CytoBandIdeogram);

    RCircos.Set.Core.Components(
    	cyto.info=UCSC.HG19.Human.CytoBandIdeogram,
    	chr.exclude=c("chrX", "chrY"),
    	tracks.inside=10, tracks.outside=0)
    RCircos.Set.Plot.Area()
    RCircos.Chromosome.Ideogram.Plot()

    data(RCircos.Tile.Data);
    RCircos.Tile.Plot(tile.data=RCircos.Tile.Data,
    	track.num=4, side="in")

    ## End(Not run)

[Package RCircos version 1.2.0 Index]