R: Cytoband Information for Rat Chromosome Ideogram

UCSC.Baylor.3.4.Rat.cytoBandIdeogram {RCircos} | R Documentation

## Cytoband Information for Rat Chromosome Ideogram

### Description

A data frame containing chromosome name, start and end position, band name, and intensity of Giemsa stains for each cytoband.

### Usage

    data(UCSC.Baylor.3.4.Rat.cytoBandIdeogram)

### Format

A data frame with 246 observations on the following 5 variables.

`Chromosome`

  a factor with levels `chr1` `chr10` `chr11` `chr12` `chr13` `chr14` `chr15` `chr16` `chr17` `chr18` `chr19` `chr2` `chr20` `chr3` `chr4` `chr5` `chr6` `chr7` `chr8` `chr9` `chrX`

`ChromStart`

  a numeric vector

`ChromEnd`

  a numeric vector

`Band`

  a factor with levels `p11` `p12` `p13` `p14` `p15` `p16` `p21` `p22` `q11` `q12` `q12.1` `q12.2` `q12.3` `q12.4` `q12.5` `q13` `q14` `q15` `q16` `q21` `q22` `q23` `q24` `q25` `q26` `q27` `q31` `q32` `q32.1` `q32.2` `q32.3` `q33` `q34` `q35` `q36` `q37` `q38` `q41` `q42` `q43` `q44` `q45` `q51` `q52` `q53` `q54` `q55`

`Stain`

  a factor with levels `gneg` `gpos` `gvar`

### Source

http://genome.ucsc.edu

[Package RCircos version 1.2.0 Index]