Package: RaceID
Title: Identification of Cell Types and Inference of Lineage Trees from
        Single-Cell RNA-Seq Data
Version: 0.2.3
Date: 2021-04-07
Author: Dominic Grün <dominic.gruen@gmail.com>
Maintainer: Dominic Grün <dominic.gruen@gmail.com>
Description: Application of 'RaceID' allows inference of cell types and prediction of lineage trees by he StemID2 algorithm. Herman, J.S., Sagar, Grün D. (2018) <DOI:10.1038/nmeth.4662>.
Depends: R (>= 3.5.0)
biocViews:
Imports: coop, compiler, cluster, FateID, FNN, fpc, ggplot2, grDevices,
        ica, igraph, irlba, locfit, methods, MASS, Matrix, matrixStats,
        parallel, pheatmap, propr, quadprog, randomForest, Rcpp,
        RColorBrewer, Rtsne, umap, vegan
LinkingTo: Rcpp (>= 0.11.0)
Suggests: batchelor, DESeq2, knitr, rmarkdown, SummarizedExperiment
VignetteBuilder: knitr
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
NeedsCompilation: yes
Packaged: 2021-04-07 21:33:49 UTC; d.grun
Repository: CRAN
Date/Publication: 2021-04-08 06:10:08 UTC
Built: R 4.1.0; x86_64-w64-mingw32; 2021-05-27 09:25:28 UTC; windows
Archs: x64
