R: Summary of fit of qtl model

summary.fitqtl {qtl} | R Documentation

## Summary of fit of qtl model

### Description

Print summary information about the results of `fitqtl`.

### Usage

    ## S3 method for class 'fitqtl'
    summary(object, pvalues=TRUE, simple=FALSE, ...)

### Arguments

`object` | Output from `fitqtl`.
`pvalues` | If FALSE, don't include p-values in the summary.
`simple` | If TRUE, don't include p-values or sums of squares in the summary.
`...` | Ignored at this point.

### Value

An object of class `summary.fitqtl`, which is not all that different than the input, but when printed gives summary information about the results.

### Author(s)

Hao Wu; Karl W Broman, broman@wisc.edu

### See Also

`fitqtl`, `makeqtl`, `scanqtl`

### Examples

    data(fake.f2)

    # take out several QTLs and make QTL object
    qc <- c(1, 8, 13)
    qp <- c(26, 56, 28)
    fake.f2 <- subset(fake.f2, chr=qc)

    fake.f2 <- calc.genoprob(fake.f2, step=2, err=0.001)
    qtl <- makeqtl(fake.f2, qc, qp, what="prob")

    # fit model with 3 interacting QTLs interacting
    # (performing a drop-one-term analysis)
    lod <- fitqtl(fake.f2, pheno.col=1, qtl, formula=y~Q1*Q2*Q3,
                  method="hk")
    summary(lod)

[Package qtl version 1.46-2 Index]