R: Print pairs of individuals with similar genotype data.

summary.comparegeno {qtl} | R Documentation

## Print pairs of individuals with similar genotype data.

### Description

Prints a summary the output from `comparegeno` that includes pairs of individuals whose proportion of matching genotypes is above a chosen threshold.

### Usage

    ## S3 method for class 'comparegeno'
    summary(object, thresh=0.9, ...)

### Arguments

`object` | An object of class `comparegeno`, the output of the function `comparegeno`.
`thresh` | Threshold on the proportion of matching genotypes.
`...` | Ignored at this point.

### Value

A data frame with each row being a pair of individuals and columns including the individual identifiers (via `getid`, or just as numeric indexes) along with the proportion of matching genotypes.

### Author(s)

Karl W Broman, broman@wisc.edu

### See Also

`comparegeno`, `plot.comparegeno`

### Examples

    data(fake.f2)
    cg <- comparegeno(fake.f2)
    summary(cg, 0.7)

[Package qtl version 1.46-2 Index]