bc02b0de935ba3c5aa8e7cc4a9c23a14 *BUGS.txt
986cd348f290739701e237a15516bb1d *CITATION
e8f6f8533e19e0bc09b67ce48a16f2f2 *DESCRIPTION
efce2c04e46e7da4fc3020bc470c5deb *INDEX
08c122ba6fcf1e570d98febee462d4ef *INSTALL_ME.txt
f6bc7c5215d6f1b0c94235a5ef381e25 *LICENSE.txt
c8b990e307ecee343beb5a217265ffcf *MQM-TODO.txt
0b4ba5e589926c8e240506766622112c *Meta/Rd.rds
e91baa45268bc8edd3801dc545383700 *Meta/data.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
9596ffcb25616dc2a0e84c3309e4d801 *Meta/hsearch.rds
8bb0556b0bd15d801386c52dea0b80a3 *Meta/links.rds
a4a0b9e8a38acadf4c360ca4bb573672 *Meta/nsInfo.rds
599ab0e4531edb63dea4ca5a2beaaf81 *Meta/package.rds
2593b4bfb19a53ac4d6804f0c0bb67b7 *Meta/vignette.rds
9a7ae045178b84f919f579af3ee49992 *NAMESPACE
41e5358150daafee56dd988c44c79166 *NEWS.md
ebf0fc819595d631b8bf280c4b049940 *R/qtl
4a169a6ec5ce92bc7c1061ae3a5d3384 *R/qtl.rdb
6a18dc47e9e1622120648e5b4b568a55 *R/qtl.rdx
1723dec70d7b0ed3c1c99e7b7581e948 *contrib/bin/CMakeLists.txt
1e10167bc08e8c501be1ac201247af7d *contrib/bin/FindRLibs.cmake
a2151c53575c7e54ceef324add76f356 *contrib/bin/README
f300bcbb15db0aa41bfa87e4598ca999 *contrib/bin/mqmdebugout.cpp
b7f842cec0ea8e7025a4495586ba4548 *contrib/bin/mqmmain.cpp
872352d722e347e7202db6d5e7208f26 *contrib/bin/regressiontests.bat
72e795393b05712e52d2dfcd013853d2 *contrib/bin/rtest/regression/mqm_listeria1.rtest
1fc00c7595303eb7b28b7c22552e6a32 *contrib/bin/rtest/regression/scanone_mr.rtest
725982f79fa57446b0c29485db932256 *contrib/bin/rtest/test_augmentation.R
200622b9e837aa6daab95d45df5f5c80 *contrib/bin/rtest/test_mqm_hyper_prob.R
ff8da1695c81b1bf1fa5ae33b55f89da *contrib/bin/rtest/test_mqm_listeria1.R
277edd7b8d3d18846bcd4c83d2470fda *contrib/bin/rtest/test_scanone_mr.R
106fc8e130e914c8e1921dca34e3a46f *contrib/bin/scripts/cleanup.sh
cf3c3279879ff2febff55923a96ba6b8 *contrib/bin/scripts/create-diff.sh
973cc58b4269e7e8301bd45983a93b78 *contrib/bin/scripts/profiler.sh
32d1bc0785a5d50f78ae5756d16e9f43 *contrib/bin/scripts/r.sh
f6b6a330299fdb56a874a47f577ebd08 *contrib/bin/scripts/regression_tests.sh
9760ebdd5b902882af0c93ea062e5e96 *contrib/bin/scripts/regression_tests_windows.bat
96a589c2fd23cc2fd5d1ad8eaf425f6e *contrib/bin/test/chrid.dat
cd80cecee345e6e4a8f0f4fa565131d9 *contrib/bin/test/chridhyper.txt
e476e10cab390697d56bb54e9ad6b435 *contrib/bin/test/cofactors.txt
0e5803c6aa09400ba7cca13fa1d2c9dd *contrib/bin/test/filledgenohyper.txt
446a8d08d0deda48af4367932016e95d *contrib/bin/test/geno.dat
3ba90f4528761f630956a01e28da2d02 *contrib/bin/test/genohyper.txt
48aa9dfa5117e23001cdde5d75e9c681 *contrib/bin/test/markerpos.txt
58e0f70e4a38f89e0ea05200b1485f4c *contrib/bin/test/markerposhyper.txt
c8fcff8988bdcad867ab1d623afa53c9 *contrib/bin/test/pheno.dat
c8bad11adb4ec06926194513c745d1c8 *contrib/bin/test/phenohyper.txt
c73498b52f1d78efb2a60720e8b1c48c *contrib/bin/test/regression/debugout_dnorm.txt
27131c5ce714adebfdd4f986662b53a6 *contrib/bin/test/regression/debugout_pbeta.txt
79cdeca0abdbc0e981163e6203a294dd *contrib/bin/test/regression/t11out-test0.txt
db72cd13d6a1e2f81ff68dc4886a1910 *contrib/bin/test/regression/t11out.txt
12edd0259b6630dd1281baf97b2ad7cf *contrib/bin/test/regression/t12out.txt
db11ebfe1d7065970b3187888bb20311 *contrib/bin/test/regression/t13out.txt
4d585be836c907068dab6809184492d0 *contrib/bin/test/regression/t21out.txt
93908e9b72560c748f51fc8edda09cb9 *contrib/bin/test/regression/t22out.txt
ed93df5f2be805fd389820394cf61221 *contrib/bin/test/regression/t23out.txt
076f23f188360ca130a7c4cf428ef4f6 *contrib/bin/test/regression/t24out.txt
421333f8f1a1a217f66601fa1d2ac8a1 *contrib/bin/test/regression/t25out.txt
d3c2546698c6f1a749821630abb0a4d8 *contrib/bin/test/regression/t31out.txt
fa97e5f006391c4a0dbdee6f9c8025fc *contrib/bin/test/regression/t32out.txt
d8acf152a44ae6e0198b2896f4174dcc *contrib/bin/test/regression/t33out.txt
be52b633c566c82bffd9eca8ea0c20c5 *contrib/bin/test/regression/t34out.txt
f43319ef224ad76487b64c22b01a6625 *contrib/bin/test/settings.dat
e03f233c8e59be66d7f013a8db976f58 *contrib/bin/test/settingshyper.txt
446a8d08d0deda48af4367932016e95d *contrib/bin/test/std/genotypes1.txt
fdfed5a596dfe2cfc1c51ef4dbd06b7a *contrib/bin/test/std/genotypes2.txt
3ba90f4528761f630956a01e28da2d02 *contrib/bin/test/std/genotypes2m.txt
2bbf9cf9386f4a96908017107406fcd1 *contrib/bin/test/std/genotypes3.txt
d9c37b331ff43e122bf6443188b3826a *contrib/bin/test/std/genotypes3m.txt
48aa9dfa5117e23001cdde5d75e9c681 *contrib/bin/test/std/markers1.txt
aaadb868ebb6041f45461a184900e31a *contrib/bin/test/std/markers2.txt
73f35c4f2740b77be7c56adf7c33616d *contrib/bin/test/std/markers3.txt
c8fcff8988bdcad867ab1d623afa53c9 *contrib/bin/test/std/phenotypes1.txt
c8bad11adb4ec06926194513c745d1c8 *contrib/bin/test/std/phenotypes2.txt
2411a1ba80fdd818d57ab6baad428651 *contrib/bin/test/std/phenotypes3.txt
9a49e2d18c04c38baa91c18c08095c12 *contrib/bin/test/std/settings1.txt
d552fec023d3136c84922f940a26d75e *contrib/bin/test/std/settings2.txt
88fc63b4af80b742e159b3d2cbec8b60 *contrib/bin/test/std/settings3.txt
c13ea1fd1dbd3322aa0773bb2712d6ab *contrib/bin/test/t11/cofactors.txt
63810466f0b74772939995cff28dbc73 *contrib/bin/test/t12/cofactors.txt
87726298c97c135ec4caaa1d77c4c3d0 *contrib/bin/test/t22/cofactors.txt
9ba0cb2dbebbf849508443e305ad22f8 *contrib/bin/test/t23/cofactors.txt
aa492705f6ef171b31d4b95208da2279 *contrib/bin/test/t33/cofactors.txt
4b9c827a80e2681861dc2d41baa7212c *contrib/bin/wincompile.bat
4b07a887cd026fadbcd9f986054f3236 *contrib/biolib/CMakeLists.txt
d89ef8ce1e7a097fb859b6f0463a28ee *contrib/biolib/README
73c7b09cfe6ae19cc28961e64ee7d8fd *contrib/scripts/check_rqtl.sh
f605130493a82e5e91911de5b6b8b6c1 *contrib/scripts/cleanup.sh
2b3f7306cdc6fb6add972d40a09d7028 *contrib/scripts/install_rqtl.sh
4baff6b3f8629e5d4a5b551a05b2b9f4 *contrib/scripts/repl_inputs.rb
6e30a9820a443a31db0538cf07c06531 *contrib/scripts/run_all_tests.sh
241ab5cd315e17513c395de2703aeec3 *contrib/scripts/update_header.rb
aaf0a84bd51282ba0c39cc06cb7f51fd *data/badorder.RData
d5ba211639834a6956f194267f6997ce *data/bristle3.RData
66579ee4f5ccb953a9a6f333cdd57362 *data/bristleX.RData
a33b9c6ab101cf2c692c684353fa09e5 *data/fake.4way.RData
26c96874953d4d9996115e21c6c48dc0 *data/fake.bc.RData
07ecb310d25cfd33622eb88fab91cc49 *data/fake.f2.RData
867762039496b63d4c8c4f9b73d4296b *data/hyper.RData
9e38797f7935e70ce14f907555b719ac *data/listeria.RData
71ed2a95d6120d2910509a080ff95440 *data/locations.RData
7b92d0a9fa5b56caabc92e3439723906 *data/map10.RData
c8be15e706f8599cdeb03283d6098cbd *data/mapthis.RData
4561ce7f1a00822f2ad1e854c1db9604 *data/multitrait.RData
c5a2ee3e930b1755c96a48b0ec3d4e98 *doc/Sources/MQM/MQM-tour.R
1211a56d552361b5b08d7da328f4823e *doc/Sources/MQM/MQM-tour.Rnw
aae9b12b0e7483f95697039886b74ed3 *doc/Sources/MQM/MQM-tour.tex
33c6a39f98c9f6ea383bb7e6120c80d6 *doc/Sources/MQM/SweaveIt.R
1b03091c6386a3efe0233c5fabfb33f8 *doc/Sources/MQM/SweaveIt.Rout
8b9c03961a1f83a3593dd2c4f424f0ee *doc/Sources/MQM/mqm/advantages_Rd.txt
9ae2c3be23d6b18713df99dea771bc74 *doc/Sources/MQM/mqm/advantages_latex.txt
e5963995b8306a5709edb4a82d312737 *doc/Sources/MQM/mqm/description.txt
fb7fb87db8e1ee8af17aa74f37a154bc *doc/Sources/MQM/mqm/limitations.txt
fe67beb7507899b848f71b812c71fd44 *doc/Sources/MQM/mqm/parallelisation_references.txt
33c48149918dc1bb67bc4dc32941d1d3 *doc/Sources/MQM/mqm/significance_references.txt
cbec485f87463463f5920867f8f7852b *doc/Sources/MQM/mqm/standard_example.txt
00c8d3ee12a9126fd90c00fb8236d0d4 *doc/Sources/MQM/mqm/standard_references.txt
93128a9804b2fd0b1be62bdc61506f4a *doc/Sources/MQM/mqm/standard_seealso.txt
dce125c0ba08d0504b05baf36296dc94 *doc/Sources/MQM/sweaveit.bat
b069721f290cbd45cc9a1d4a13c93603 *doc/Sources/MQM/sweaveit.sh
ce27d0a1a38d1c43e3da6accf92df372 *doc/Sources/geneticmaps.Rnw
380f79ca75c5ac3187513d674862dac8 *doc/Sources/new_multiqtl.Rnw
7743409fb09a35b80fb22da863cbea8b *doc/Sources/new_summary_scanone.Rnw
2d06706e91525e0e8f56ca2b2f025636 *doc/Sources/new_summary_scantwo.Rnw
6e5dd7b4462c4d1b74d3dd2da38f5796 *doc/Sources/rqtltour.tex
b8f91bbddb0c0dcee45085b0fe945c6f *doc/Sources/rqtltour2.tex
50aa128d97d4128f18aa9ef642c6d494 *doc/bcsft.R
6c73b8c6e1dc686c1a36c9872a318bfe *doc/bcsft.Rnw
d0bd70fa760901c2da9e874c1686c3f7 *doc/bcsft.pdf
ccbd21a4f84d3800e3330b0171883b26 *doc/geneticmaps.R
f326aab03d4745094152713cca6cbe25 *doc/geneticmaps.pdf
273f190910374e3ef2a09706ef542f34 *doc/index.html
40eb8179441ce7496f6c5e252c8b2b56 *doc/new_multiqtl.R
2bfd394e7e6556f6f7043e9034c64234 *doc/new_multiqtl.pdf
b7ee88c6b1ce5df40209c9bd58acf9b8 *doc/new_summary_scanone.R
1e49e4956c20a4fb3554633734be1bbb *doc/new_summary_scanone.pdf
a808a0dcf90e74a422bf3ea84f4bd55b *doc/new_summary_scantwo.R
83dbe80c9f5b641b0b269be341c80df2 *doc/new_summary_scantwo.pdf
20f1ad8aeb8fd6c722ed5a3de0885cc8 *doc/rqtltour.R
2d06398d51c6b103efc4dd813352b229 *doc/rqtltour.pdf
ea48cfd7fee328162b3fb49a827f3606 *doc/rqtltour2.R
9a96f4b56fc1261842541ec107638d92 *doc/rqtltour2.pdf
864724b8b3443e1f343ad958367c4f5e *help/AnIndex
8319f155861ab072a1d580396be5ea3b *help/aliases.rds
319c7503a551019daf594f628b0809eb *help/paths.rds
973a714dfd85dfc8a6ddae89a69ec15d *help/qtl.rdb
5889c35199e8d345882800b76b2a1fd7 *help/qtl.rdx
55f6d82820111dec741295ccbf2e967f *html/00Index.html
b4805b800eb264a996c6ee8720185c4d *html/MQM.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
5a29efe513eeb5c4a58b2665d599ac5c *html/a.starting.point.html
88435de84ff2d5f40f59cc578694b9cd *html/add.cim.covar.html
33f00f9305a019a81ddafcedd9a23a9a *html/add.threshold.html
451ca8c29167c519246e6064962537d5 *html/addcovarint.html
a3d0699f6816d55b3ef0bc3997618869 *html/addint.html
bc0447e4925384efa4323d4c6ad7fcd2 *html/addloctocross.html
917db7e33329771b85da05b734411ccc *html/addmarker.html
5aa2d8a3f90ea679484e5f02c722353e *html/addpair.html
7b39f77133f309d405380d89b794ef58 *html/addqtl.html
2ad51e693862a8e40eec0d7350f64f7d *html/addtoqtl.html
3344758ec5911597f7c36867f1c4f4f2 *html/allchrsplits.html
392f5fb0dea8d6d023f41912adc14406 *html/argmax.geno.html
4340bc050c2033af50cea26f6efc100b *html/arithscan.html
110c703c23e564e214e6cdf0a22f9433 *html/arithscanperm.html
3c4059fb0639951372ad099124fb6eb2 *html/badorder.html
c287176ffde5a724acd637c0fff04e8e *html/bayesint.html
5ffb87b21a90a83e68c37143cbf45942 *html/bristle3.html
5348f4c190969bb579c8f77415b2ce07 *html/bristleX.html
df57bcaa0c3d0e3351b870b07e165c77 *html/c.cross.html
16916af6ed5abced63b789a278244c84 *html/c.scanone.html
82013a5e0092f708efbbc0349b3d28e2 *html/c.scanoneperm.html
42091e3e7c7588a399429c5f2eefdc9a *html/c.scantwo.html
ee479f2a4a4c19775edff0f554d1731e *html/c.scantwoperm.html
49668a03780517626231b593c71a0635 *html/calc.errorlod.html
d9b49c196296c5a74118381b3043b5fb *html/calc.genoprob.html
72200eac04f329810700a3b246f849de *html/calc.penalties.html
f868b10a6cb91599ecd6f22b1818709b *html/cbind.scanoneperm.html
3dd9d645e2c796cf484ef4b79c6e4732 *html/cbind.scantwoperm.html
53b116ed0a7200277306ed737f7fa732 *html/checkAlleles.html
fdc541724ac7dc917ca238413e3efb29 *html/chrlen.html
4084ece3060eedd1260bf3a0e2105bac *html/chrnames.html
27fc6b9bd650cc754e047ed257b8d389 *html/cim.html
89e40076c621048d6cba3569666fb30c *html/clean.cross.html
a9d145651a0b119f21137ec647f35b47 *html/clean.scantwo.html
40f68824b802359900d2a533ea39e9c1 *html/cleanGeno.html
281d9cffb24ac943f590532fea8fffb1 *html/comparecrosses.html
813f8180d8b8ccb88e045d242c5b0848 *html/comparegeno.html
8bc6b4e04da687212712649a7b75324b *html/compareorder.html
cc8cab2ad6ff8e68af8178a8723f6598 *html/condense.scantwo.html
d9e3dfe09820743c3afe01283eacc1fd *html/convert.map.html
076cf3f1e6e993ce51d628852b1a83e0 *html/convert.scanone.html
b1a2bb3dc87d4a1a804cbaa4f544ed04 *html/convert.scantwo.html
88517b6c91c256886ad85d8bc550e112 *html/convert2riself.html
53d1164eb4579a5f55430bf65c53b707 *html/convert2risib.html
3ab36da1e8ae810d04f925f82ffdc685 *html/convert2sa.html
a4adb97bbef7c3dcbc90e3e8bc1116cf *html/countXO.html
2dd8e63499211a19036f5ab2a896aa2a *html/drop.dupmarkers.html
50d0b511fbff074e38b5e6ccc9426db8 *html/drop.markers.html
8357879e0064c99ddceb0d7003bf67d1 *html/drop.nullmarkers.html
3f5c220b1babf4ad4aaf725b459a8e54 *html/dropfromqtl.html
9147acf71f723db903af7cdfe40bf842 *html/droponemarker.html
427e97d9740379dd53e9f90fe03ec1e8 *html/effectplot.html
9487c497f1887c1d9de3e4c590e034e2 *html/effectscan.html
73c86f264602c4b472321dc019e778bf *html/est.map.html
0501c20efe0d4ec002f88f8cd528c644 *html/est.rf.html
f6a425ca730efff770817ead82173552 *html/fake.4way.html
0736c54ba166e90add31f49abf10e5d7 *html/fake.bc.html
3a8415fb507dc890c5da79bd4468a594 *html/fake.f2.html
98b8c5e81b9439a75d6a46b5b987d7ac *html/fill.geno.html
9dd494c55b56c631013d137f51c98803 *html/find.flanking.html
964955c4001c1ca731df2eae7664f521 *html/find.marker.html
8e9d67df1ad7fcd31bd09f6b83ff1562 *html/find.markerpos.html
b12467892bcc3a847c192ffe183e4542 *html/find.pheno.html
654ceff366dfa94e44355fcadf532ade *html/find.pseudomarker.html
00b0654759148fa33462ba298535bb75 *html/findDupMarkers.html
43e6b893b1668d49354b9172c649df70 *html/findmarkerindex.html
ced749c16939f1854388aff17409ec31 *html/fitqtl.html
724d4530db19021ca2b4d5d8f1a6e5bd *html/fitstahl.html
84ffc16745b823ecda5d303e997ab5bb *html/flip.order.html
f19b02cb985b021ecc776d11adb9a7de *html/formLinkageGroups.html
29e21f27b2f8919b474d5a44db6f13d7 *html/formMarkerCovar.html
3e27e6ecd6204354e3fd78c7b82ab148 *html/geno.crosstab.html
4529faaa4963829814f8f5e9f0da6c03 *html/geno.image.html
d411abca8f40add83062554e47a973b7 *html/geno.table.html
550cdfbbb65d64123f31c03c44bf8c80 *html/getid.html
1ca7225139c2638ca3a737bc5ed9e1a7 *html/groupclusteredheatmap.html
574007c92ecead690044a13cdcc78d06 *html/hyper.html
d8ef35339600f40b872ceb8a245ad9e3 *html/inferFounderHap.html
76882ac0ccbb378909e36b6ee1319bda *html/inferredpartitions.html
f46c16a4ed29845310ad6d06c038501a *html/interpPositions.html
edcb7cb9a5d82740a7261a5c182aad71 *html/jittermap.html
5b39d94b91d5031e810f9f1a6aa8dbb5 *html/listeria.html
941ca6776e2a99359a482a7f74b7199e *html/locateXO.html
c228f8b2fd1ae9de8e693a125379549e *html/locations.html
b2bde87db71407208ff198e799d77223 *html/lodint.html
4afa0dd01e7b3f01883f0c8794da96aa *html/makeqtl.html
daa640d4a3b456d042f41f1848b80e99 *html/map10.html
61e0f30066f5c8e9668e6bc066ca9f8e *html/map2table.html
9bc64d11cd45b4a0f999ea0f65896a77 *html/mapthis.html
f985800869dd0e93fb4f1d53a08bade4 *html/markerlrt.html
419d279ea12163c0ee546c4ae6c71b0b *html/markernames.html
19b13199b01336057589d3baaec26405 *html/max.scanPhyloQTL.html
c380f2f29e04298c863ffd4e31df774a *html/max.scanone.html
0cf4810a5ff68e3d3c00d10cca868bca *html/max.scantwo.html
e9a2ceb54da9d1ce09429a9124fff40c *html/movemarker.html
fa6156dd677337d733940d344cd4995d *html/mqmaugment.html
fc575de0d9dc3e472119b85cb4bb849a *html/mqmautocofactors.html
cbc9f7e6e10c62942be82726229df847 *html/mqmextractmarkers.html
5489f9befcaa44eaa82f1a0fb60fe132 *html/mqmfind.marker.html
f9e5ece843e4edcaf11fae4d31e829f8 *html/mqmgetmodel.html
e4ce8df8b2074a1aad5d0bc8320652b4 *html/mqmpermutation.html
1c8059d8d977b4d25fa3cc3355310e69 *html/mqmplotcircle.html
f992e4187f61de210f88ded74dd8c7ba *html/mqmplotcistrans.html
b99432b91be3306bf753d341727b9c19 *html/mqmplotclusteredheatmap.html
35f28449ab673d8a7af44dde28989815 *html/mqmplotcofactors.html
c8cefb53c914bc7c71af54f1f8556f30 *html/mqmplotdirectedqtl.html
3900792e16e34d5cdbfb1bc635244464 *html/mqmplotheatmap.html
3b1af1619a94612b6204caeaa0a08b1f *html/mqmplotmultitrait.html
ec2c1b24f50fcf4171d2a9c58cf373a7 *html/mqmplotpermutations.html
67071202cecaef7183f079bd5d2665ee *html/mqmplotsingletrait.html
b7494be90ba74d1bfaba6f8239f65251 *html/mqmprocesspermutation.html
7f9bbf3662b38b0cea94cd4ff832551b *html/mqmscan.html
9420c4cbb6294ebe0453c18787bf4af2 *html/mqmscanall.html
a75ebd73133536bf673ab44953033a8f *html/mqmscanfdr.html
00088566971afbc1fa77e6c782bb09c6 *html/mqmsetcofactors.html
179f913aad5c273d5e8f359646c0ff74 *html/mqmtestnormal.html
1fbd7eee5d7898913cac33da14a28736 *html/multitrait.html
47bc56e54c37ad2605c59efb5415ac88 *html/nchr.html
687ca95c93a5ece7f8b27a9a9dd2a1f1 *html/nind.html
79e0f6dc76745f15de44a886dbf68f47 *html/nmar.html
cfab5e69b152d3b4e29b564cb1dde90b *html/nmissing.html
9f8780412e49923451c1304cdaeaa57e *html/nphe.html
5ebf3a88a4c058354c57407fa081fb9e *html/nqrank.html
ab7ee7f37bb86e5f000ac3b00e6d5216 *html/nqtl.html
e368234c88879a249ed6dd7342ad059c *html/ntyped.html
50b285370e1feb54386046860d7fca8f *html/nullmarkers.html
3bb5733caeeb947b38836e4732ec513e *html/orderMarkers.html
0142ffb003e4cda7949d294b34264dcf *html/phenames.html
ffcb053c206b605e0d4153a65d0eeb47 *html/pickMarkerSubset.html
40af2bda8d7217086c8b6f5c35769e4f *html/plot.comparegeno.html
96f9d1ff3aee0110d6580139d3d1b770 *html/plot.cross.html
ab515b58f95d5a768ef616f82303ab10 *html/plot.errorlod.html
741e74054bc14bef4379e2e250bf76c8 *html/plot.geno.html
e9a958a2a2a7984254b3cd9cea9f43e6 *html/plot.info.html
92c211751bcfbe10b5f5043dcd52552f *html/plot.map.html
9d3ba1bafb829e0b4c9a58aea0cf3e75 *html/plot.missing.html
d9eb52cdd2ed5dcafd1a0f10a9674481 *html/plot.pheno.html
c331f2318ddf30d297d6a79168fadd6c *html/plot.pxg.html
d4e904507e1a6902803af765702bed48 *html/plot.qtl.html
fac47b9d69e05d965cfcfbc9d0347a86 *html/plot.rf.html
93d3875fa0458f582f19cc710df00041 *html/plot.rfmatrix.html
7d60a99ee80415a3ad8b5642d274825e *html/plot.scanPhyloQTL.html
bd35a9c709c9943652942f217e0a57ae *html/plot.scanone.html
9f23b4252b1badea4a67d123dfe47e63 *html/plot.scanoneboot.html
3509dc4a000137f931387beeec7bc948 *html/plot.scanoneperm.html
b3d7bd5719c4441709cbf44085a7fc5a *html/plot.scantwo.html
d22fd6c4f816cb68751c2bfbbf069dbd *html/plot.scantwoperm.html
7f16ea0cb5b98bc24de2875f75c2d6ca *html/plotLodProfile.html
20f16da4536bed5e3fa7fa945909e43a *html/plotModel.html
33018e58aff4d4498e076da7dc06f111 *html/pull.argmaxgeno.html
61e4e0e2cd679ae326eb7889218fa08e *html/pull.draws.html
32b599461bdbae3624fccf461b9a744c *html/pull.geno.html
ecfaca081544e88a8888d0d473146fa5 *html/pull.genoprob.html
e5e72b25a3048084446161292c3596a7 *html/pull.map.html
926b7a94fc80c2dbe89679a958bd8852 *html/pull.markers.html
dc7570d6b0ab0b14d0a1d00e03685f3b *html/pull.pheno.html
9c84dc3d2f87dae2d86916ab841ad845 *html/pull.rf.html
83579de886f0593f12ad6c98b7d88df3 *html/qtl-internal.html
b01991d91970c258c5f355cef7a57dfb *html/qtlversion.html
9066815e6df2d84e654c1d5c4ec935df *html/read.cross.html
b53837e840def1b42b9c757126209043 *html/readMWril.html
6295dcac5eee1c9da2225d8d9bb8b3ef *html/reduce2grid.html
c76fbee46420d24c140700443a198466 *html/refineqtl.html
0a27cfe72ad0a7fc495c0d2b489ae8a9 *html/reorderqtl.html
ab3d4f9b15c161766ec81acc1ffe5c33 *html/replace.map.html
190a3e79cbce8b2ac9cee1560c727ce4 *html/replacemap.scanone.html
4f372d889361312e333582bf0c9206ee *html/replacemap.scantwo.html
b1153bfc3bd91b9c44734192cb4bfde9 *html/replaceqtl.html
0851baa0a855211bf795157f688d0ed2 *html/rescalemap.html
0995a4c25858ea4834156e573d82e700 *html/ripple.html
49533d383025a8d712264b61d536adb6 *html/scanPhyloQTL.html
1dab0a149652d90cc6d4949f735b174a *html/scanone.html
595e74be792685a77816506e9b35611f *html/scanoneboot.html
4d1aab44c4a5851ec62e3210e47881b2 *html/scanonevar.html
1ac0856a6998e698b856ba92f08c6287 *html/scanonevar.meanperm.html
3cef6fea26e33358ffb01fd866846c53 *html/scanonevar.varperm.html
cada2081bf60a77151ffa8c5f501a614 *html/scanqtl.html
257271c1cea3b8cd6b95b8e9ec426c4b *html/scantwo.html
771e996956050624bbff58263acd9983 *html/scantwopermhk.html
ec594d9704a405efb436ea10cd1aa550 *html/shiftmap.html
72ce164e41e4fbfdb2f0207928ed5682 *html/sim.cross.html
4ca7b3351fc993740df6f6b4f82d1be9 *html/sim.geno.html
57e05957462219ad4641c30812b88521 *html/sim.map.html
79ffde78152911017730747a8526baa5 *html/simFounderSnps.html
a0271ac5924f1c468109820fa8901470 *html/simPhyloQTL.html
4d292ea6cfba514aa07ea3fdfc75d711 *html/simulateMissingData.html
000e023fd50d1206e0dfb2b9dd679854 *html/stepwiseqtl.html
4d275c47e8cbda828dde3129f28fe772 *html/strip.partials.html
01ad3fea6de55ce226a6773c603b6085 *html/subset.cross.html
c42fe487e927c9372fd2c5da76325d71 *html/subset.map.html
5da0111126972c4e3a5de8fa3d891ea6 *html/subset.scanone.html
61c9bdc0b58833d66accf8af5e3e9dbb *html/subset.scanoneperm.html
ff3eae6247a730c7bb00449cff10e1e8 *html/subset.scantwo.html
f6aa91b1540212c865c3f00e1971042e *html/subset.scantwoperm.html
2e8f463068872e57a7ab089fa14d3b2c *html/summary.comparegeno.html
a822af9f3066fc985783b0aed0f7574e *html/summary.cross.html
bb6dc731febd8507d886328c0efdf165 *html/summary.fitqtl.html
2cf8b60eaad65bbc5231216a2568b316 *html/summary.map.html
c5bc458c032fa53bb08d05f722351040 *html/summary.qtl.html
f7d1b28886be2e3be1a3330bed18ac70 *html/summary.ripple.html
731aa44f95457cc1bc671e45edb65789 *html/summary.scanPhyloQTL.html
cdec2e3cae19d287fe3199389557da3c *html/summary.scanone.html
61bc02093832856f900ee0c60b90cfb7 *html/summary.scanoneboot.html
a7eee0a6bb280cb241ff3015789d2326 *html/summary.scanoneperm.html
afcde22565c99d4aa018f2269dd65c27 *html/summary.scantwo.html
1454b25b412c46609862ac51e15439eb *html/summary.scantwo.old.html
1281578b4ea9e9de7e850386de826a26 *html/summary.scantwoperm.html
c0a4dcdb859c43999e3f280d19422530 *html/switch.order.html
efad7d43b9dff066ff98c361e327d5ac *html/switchAlleles.html
ea00624c63a4e06445891ff3573b1323 *html/table2map.html
a4df178f716fda4d2c4e71abde41a3ab *html/top.errorlod.html
19b4052f48f27543abfb9c32e7ff4a5c *html/totmar.html
93aacb292bd47ac77f283a311f93668b *html/transformPheno.html
eb0c041a4be87fde6dd33f366657b1aa *html/tryallpositions.html
ed98668d47536479978f57f5ac9db478 *html/typingGap.html
2373e542b7f405d22103cfd6a3760376 *html/write.cross.html
4f035e2fe9f5440c39709d290539cd17 *html/xaxisloc.scanone.html
2adc9c2921505483972f42625b62e969 *libs/x64/qtl.dll
1b42a662f601adaa9660800eefa4e42f *sampledata/README.txt
f6a9eebc3f37d26e0a5b8ed672354712 *sampledata/gen.txt
9198bd35e7a221556c5e2008d00cf84c *sampledata/listeria.csv
846a80e9b730dc4a5144437d1563f0a0 *sampledata/listeria.qtx
e064a29e8b8199c38b094b9c8170b434 *sampledata/listeria_gen.csv
2dcca54c31a1e372c6da15881636d2c4 *sampledata/listeria_gen_rot.csv
01b987cb739560eafac3cf41ec0c6154 *sampledata/listeria_map.txt
3bc93e86db600b2f263a1a197269e8de *sampledata/listeria_maps.txt
9bc5c1daf65145ed51a7acf1c30e6146 *sampledata/listeria_phe.csv
216700811ae74ee1d581d7cff9504f05 *sampledata/listeria_phe_rot.csv
3efd61cac8e5cdbba21f04c0d5a56adc *sampledata/listeria_qc_cro.txt
a857de8b79fd03837008a0d750dfad9c *sampledata/listeria_qc_map.txt
8520b0234e8d59152126248b0cfa7566 *sampledata/listeria_raw.txt
af7100ff129f117e5d3b67cd10a76f63 *sampledata/listeria_rot.csv
dde45251d41488fedc3693dc67fc9429 *sampledata/map.txt
ffecb0696dd5873a13e48157180271fa *sampledata/phe.txt
