R: Plot genotype comparison

plot.comparegeno {qtl} | R Documentation

## Plot genotype comparison

### Description

Plot the results of the comparison of all pairs of individuals' genotypes. A histogram of the proportion of matching genotypes, with tick marks at individual values below, via `rug`.

### Usage

    ## S3 method for class 'comparegeno'
    plot(x, breaks=NULL, main="",
         xlab="Proportion matching genotypes", ...)

### Arguments

`x` | An object of class `"comparegeno"`, as produced by `comparegeno`.
`breaks` | Passed to `hist`, with the default 2 √{n} where n is the number of pairs of individuals.
`main` | Title for the plot.
`xlab` | x-axis label for the plot.
`...` | Passed to `hist`.

### Details

Creates a histogram with `hist` with ticks at individual values using `rug`.

### Value

None.

### Author(s)

Karl W Broman, broman@wisc.edu

### See Also

`comparegeno`, `summary.comparegeno`

### Examples

    data(fake.f2)
    cg <- comparegeno(fake.f2)
    plot(cg)

[Package qtl version 1.46-2 Index]