R: Bootstrap confidence interval for QTL location

summary.scanoneboot {qtl} | R Documentation

## Bootstrap confidence interval for QTL location

### Description

Calculates a bootstrap confidence interval for QTL location, using the bootstrap results from `scanoneboot`.

### Usage

    ## S3 method for class 'scanoneboot'
    summary(object, prob=0.95, expandtomarkers=FALSE, ...)

### Arguments

`object` | Output from `scanoneboot`.
`prob` | Desired coverage.
`expandtomarkers` | If TRUE, the interval is expanded to the nearest flanking markers.
`...` | Ignored at this point.

### Value

An object of class `scanone`, indicating the position with the maximum LOD, and indicating endpoints for the estimated bootstrap confidence interval.

### Author(s)

Karl W Broman, kbroman@biostat.wisc.edu

### See Also

`scanoneboot`, `plot.scanoneboot`, `lodint`, `bayesint`

### Examples

    ## Not run: data(fake.f2)
    fake.f2 <- calc.genoprob(fake.f2, step=1, err=0.001)
    bootoutput <- scanoneboot(fake.f2, chr=13, method="hk")

    summary(bootoutput)
    ## End(Not run)

[Package qtl version 1.41-6 Index]