R: Strip partially informative genotypes

strip.partials {qtl} | R Documentation

## Strip partially informative genotypes

### Description

Replace all partially informative genotypes (e.g., dominant markers in an intercross) with missing values.

### Usage

    strip.partials(cross, verbose=TRUE)

### Arguments

`cross` | An object of class `cross`. See `read.cross` for details.
`verbose` | If TRUE, print the number of genotypes removed.

### Value

The same class `cross` object as in the input, but with partially informative genotypes made missing.

### Author(s)

Karl W Broman, kbroman@biostat.wisc.edu

### See Also

`plotMissing`, `plotInfo`

### Examples

    data(listeria)
    sum(nmissing(listeria))
    listeria <- strip.partials(listeria)
    sum(nmissing(listeria))

[Package qtl version 1.41-6 Index]