R: Replace the genetic map of a cross

replace.map {qtl} | R Documentation

## Replace the genetic map of a cross

### Description

Replace the map portion of a cross object.

### Usage

    replace.map(cross, map)
    ## S3 method for class 'cross'
    replacemap(object, map)

### Arguments

`cross` | An object of class `cross`. See `read.cross` for details.
`object` | Same as `cross`.
`map` | A list containing the new genetic map. This must be the same length and with the same marker names as that contained in `cross`.

### Value

The input `cross` object with the genetic map replaced by the input `map`. Maps for results from `calc.genoprob`, `sim.geno` and `argmax.geno` are also replaced, using interpolation if necessary.

### Author(s)

Karl W Broman, kbroman@biostat.wisc.edu

### See Also

`pull.map`, `est.map`

### Examples

    data(fake.f2)

    newmap <- est.map(fake.f2)
    plotMap(fake.f2, newmap)
    fake.f2 <- replace.map(fake.f2, newmap)

[Package qtl version 1.41-6 Index]