R: MQM marker extraction

mqmextractmarkers {qtl} | R Documentation

## MQM marker extraction

### Description

Extract the real markers from a cross object that includes pseudo markers

### Usage

    mqmextractmarkers(mqmresult)

### Arguments

`mqmresult` | result from `mqmscan`, including pseudo markers

### Value

Returns a scanone object with the pseudo markers removed

### Author(s)

Ritsert C Jansen; Danny Arends; Pjotr Prins; Karl W Broman kbroman@biostat.wisc.edu

### See Also

- The MQM tutorial: http://www.rqtl.org/tutorials/MQM-tour.pdf

- `MQM` - MQM description and references

- `mqmscan` - Main MQM single trait analysis

- `mqmscanall` - Parallellized traits analysis

- `mqmaugment` - Augmentation routine for estimating missing data

- `mqmautocofactors` - Set cofactors using marker density

- `mqmsetcofactors` - Set cofactors at fixed locations

- `mqmpermutation` - Estimate significance levels

- `scanone` - Single QTL scanning

### Examples

    data(multitrait)

    multitrait <- fill.geno(multitrait)

    result <- mqmscan(multitrait)
    newresult <- mqmextractmarkers(result)

[Package qtl version 1.41-6 Index]