R: Move a marker to a new chromosome

movemarker {qtl} | R Documentation

## Move a marker to a new chromosome

### Description

Move a specified marker to a different chromosome.

### Usage

    movemarker(cross, marker, newchr, newpos)

### Arguments

`cross` | An object of class `cross`. See `read.cross` for details.
`marker` | The name of the marker to be moved (a character string).
`newchr` | The chromosome to which the marker should be moved.
`newpos` | The position (in cM) at which the marker should be placed. If missing, the marker is placed at the end of the chromosome.

### Value

The input `cross` object, but with the specified marker moved to the specified chromosome.

All intermediate calculations (such as the results of `calc.genoprob` and `est.rf`) are removed.

### Author(s)

Karl W Broman, kbroman@biostat.wisc.edu

### See Also

`switch.order`

### Examples

    data(badorder)
    badorder <- movemarker(badorder, "D2M937", 3, 48.15)
    badorder <- movemarker(badorder, "D3M160", 2, 28.83)

[Package qtl version 1.41-6 Index]