biom_raw_data           Extract raw data from a BIOM object.
biom_taxonomy           Extract taxonomy info from a biom object.
dist_get                Retrieve distances from a '"dist"' object.
dist_groups             Create a data frame of distances between groups
                        of items.
dist_subset             Extract parts of a '"dist"' object.
make_otu_table          Create an OTU table.
otu_heatmap             Create a heatmap of OTU counts.
qiimer                  qiimer: Read QIIME output files and create
                        plots
rarefaction_stats       Compute summary statistics for collated alpha
                        diversity tables.
read_blast_table        Parse tabular output from BLAST.
read_qiime_distmat      Read a QIIME distance matrix file.
read_qiime_mapping_file
                        Read a QIIME sample mapping file.
read_qiime_otu_mapping
                        Parse an OTU mapping file from QIIME.
read_qiime_otu_table    Parse a QIIME OTU table file in "calssic"
                        format.
read_qiime_rarefaction
                        Read a collated alpha diversity table from
                        QIIME.
relmbeta                Sample dataset from murine gut microbiome
relmbeta_alpha          Shannon diversity measurements from murine gut
                        microbiome
relmbeta_assignments    Taxonomic assignments from murine gut
                        microbiome
relmbeta_biom           BIOM format object from murine gut microbiome
relmbeta_counts         OTU counts from murine gut microbiome
relmbeta_dist           Unweighted UniFrac distances from murine gut
                        microbiome
saturated_rainbow       Saturated rainbow palette.
simplify_assignments    Reformat taxonomic assignments for
                        presentation.
split_assignments       Split taxonomic assignment strings
taxonomic_ranks         Standard taxonomic ranks.
