R: Print Function for Pvclust Object

print.pvclust {pvclust} | R Documentation

## Print Function for Pvclust Object

### Description

print clustering method and distance measure used in hierarchical clustering, p-values and related statistics for a `pvclust` object.

### Usage

    ## S3 method for class 'pvclust'
    print(x, which=NULL, digits=3, ...)

### Arguments

`x` | object of class `pvclust`.
`which` | numeric vector which specifies the numbers of edges (clusters) of which the values are printed. If `NULL` is given, it prints the values of all edges. The default is `NULL`.
`digits` | integer indicating the precision to be used in rounding.
`...` | other parameters used in the function.

### Value

this function prints p-values and some related statistics.

`au` | AU (Approximately Unbiased) p-value, which is more accurate than BP value as unbiased p-value. It is computed by multiscale bootstrap resampling.
`bp` | BP (Bootstrap Probability) value, which is a simple statistic computed by bootstrap resampling. This value tends to be biased as p-value when the absolute value of `c` (explained below) is large.
`se.au, se.bp` | estimated standard errors for `au` and `bp`, respectively.
`v, c` | values related to geometric aspects of hypotheses. `v` is signed distance and `c` is curvature of the boundary.
`pchi` | p-values of chi-square test based on asymptotic theory.

### Author(s)

Ryota Suzuki suzuki@ef-prime.com

[Package pvclust version 2.0-0 Index]