R: convert an object of class ideal to a coda MCMC object

idealToMCMC {pscl} | R Documentation

## convert an object of class ideal to a coda MCMC object

### Description

Converts the x element of an `ideal` object to an MCMC object, as used in the coda package.

### Usage

    idealToMCMC(object, burnin=NULL)

### Arguments

`object` | an object of class `ideal`.
`burnin` | of the recorded MCMC samples, how many to discard as burnin? Default is `NULL`, in which case the value of `burnin` in the `ideal` object is used.

### Value

A `mcmc` object as used by the coda package, starting at iteration `start`, drawn from the `x` component of the `ideal` object.

### Note

When specifying a value of `burnin` different from that used in fitting the `ideal` object, note a distinction between the iteration numbers of the stored iterations, and the number of stored iterations. That is, the `n`-th iteration stored in an `ideal` object will not be iteration `n` if the user specified `thin>1` in the call to `ideal`. Here, iterations are tagged with their iteration number. Thus, if the user called `ideal` with `thin=10` and `burnin=100` then the stored iterations are numbered `100, 110, 120, ...`. Any future subsetting via a `burnin` refers to this iteration number.

### See Also

`ideal`, `mcmc`

### Examples

    data(s109)
    f = system.file("extdata",package="pscl","id1.rda")
    load(f)
    id1coda <- idealToMCMC(id1)
    summary(id1coda)

[Package pscl version 1.5.2 Index]