R: LC-MS Map

lcmsmap {protViz} | R Documentation

## LC-MS Map

### Description

The function graphs a LC-MS map having for all charge states and each single charge state. The rt is on the x axis and the y axis represents the peptide mass.

### Usage

        lcmsmap(data, charges=2:3, score.cutoff = 30, ...)

### Arguments

`data` | an R data object as it can be obtained by `mascotDat2RData.pl` or by using mascots export function.
`charges` | a vector of charge states to be displayed.
`score.cutoff` | a numeric value taken as score cut-off.
`...` | pass arguments to `plot` function.

### Author(s)

Christian Panse and Jonas Grossmann 2013;

### References

idea taken from from the ISB TPP Pep3D view PMID: 15228367

[Package protViz version 0.2.45 Index]