citHeader("To cite propr in publications use:")

citEntry(entry = "Article",
         title        = paste("A field guide for the compositional analysis of any-omics data"),
         author       = personList(as.person("Thomas P Quinn"),
                                   as.person("Ionas Erb"),
                                   as.person("Greg Gloor"),
                                   as.person("Cedric Notredame"),
                                   as.person("Mark F Richardson"),
                                   as.person("Tamsyn M Crowley")),
         journal      = "GigaScience",
         year         = "2019",
         volume       = "8",
         number       = "9",

         textVersion  =
           paste("Quinn TP, Erb I, Gloor G, Notredame C, Richardson MF, Crowley TM (2019)",
                 "A field guide for the compositional analysis of any-omics data.",
                 "GigaScience 8(9). doi:10.1093/gigascience/giz107")
)

citEntry(entry = "Article",
         title        = paste("Understanding sequencing data as compositions:",
                              "an outlook and review"),
         author       = personList(as.person("Thomas Quinn"),
                                   as.person("Ionas Erb"),
                                   as.person("Mark F. Richardson"),
                                   as.person("Tamsyn Crowley")),
         journal      = "Bioinformatics",
         year         = "2018",
         volume       = "34",
         number       = "16",

         textVersion  =
           paste("Quinn T, Erb I, Richardson MF, Crowley T (2018)",
                 "Understanding sequencing data as compositions:",
                 "an outlook and review. Bioinformatics 34(16):",
                 "doi:10.1093/bioinformatics/bty175")
)

citEntry(entry = "Article",
         title        = paste("Differential Proportionality - A Normalization-Free Approach",
                              "To Differential Gene Expression"),
         author       = personList(as.person("Ionas Erb"),
                                   as.person("Thomas Quinn"),
                                   as.person("David Lovell"),
                                   as.person("Cedric Notredame")),
         journal      = paste("Proceedings of CoDaWork 2017, The 7th Compositional Data Analysis Workshop;",
                              "available under bioRxiv 134536"),
         year         = "2017",

         textVersion  =
           paste("Erb I, Quinn T, Lovell D, Notredame C (2017)",
                 "Differential Proportionality - A Normalization-Free",
                 "Approach To Differential Gene Expression.",
                 "Proceedings of CoDaWork 2017, The 7th Compositional",
                 "Data Analysis Workshop; available under bioRxiv",
                 "134536: doi:10.1101/134536")
)

citEntry(entry = "Article",
         title        = paste("propr: An R-package for Identifying Proportionally Abundant",
                              "Features Using Compositional Data Analysis"),
         author       = personList(as.person("Thomas Quinn"),
                                   as.person("Mark F. Richardson"),
                                   as.person("David Lovell"),
                                   as.person("Tamsyn Crowley")),
         journal      = "Scientific Reports",
         year         = "2017",
         volume       = "7",
         number       = "16252",

         textVersion  =
           paste("Quinn T, Richardson MF, Lovell D, Crowley T (2017)",
                 "propr: An R-package for Identifying Proportionally",
                 "Abundant Features Using Compositional Data Analysis.",
                 "Scientific Reports 7(16252): doi:10.1038/s41598-017-16520-0")
)

citEntry(entry = "Article",
         title        = "How should we measure proportionality on relative gene expression data?",
         author       = personList(as.person("Ionas Erb"),
                                   as.person("Cedric Notredame")),
         journal      = "Theory in Biosciences",
         year         = "2016",
         volume       = "135",
         number       = "1",

         textVersion  =
           paste("Erb I, Notredame C (2016) How should we measure proportionality",
                 "on relative gene expression data? Theory in Biosciences 135(1):",
                 "doi:10.1007/s12064-015-0220-8")
)

citEntry(entry = "Article",
         title        = "Proportionality: A Valid Alternative to Correlation for Relative Data",
         author       = personList(as.person("David Lovell"),
                                   as.person("Vera Pawlowsky-Glahn"),
                                   as.person("Juan Jose Egozcue"),
                                   as.person("Samuel Marguerat"),
                                   as.person("Jurg Bahler")),
         journal      = "PLoS Computational Biology",
         year         = "2015",
         volume       = "11",
         number       = "3",

         textVersion  =
           paste("Lovell D, Pawlowsky-Glahn V, Egozcue JJ,",
                 "Marguerat S, Bahler J (2015) Proportionality: A Valid",
                 "Alternative to Correlation for Relative Data. PLoS",
                 "Computational Biology 11(3): doi:10.1371/journal.pcbi.1004075")
)
