R: Get Network from Object

getNetwork {propr}

R Documentation

Get Network from Object

Description

This function provides a unified wrapper to build networks from propr and propd objects.

Usage

getNetwork(object, cutoff = NA, propr.object, propr.cutoff = NA,
  thetad.object, thetad.cutoff = NA, thetae.object, thetae.cutoff = NA,
  col1, col2, include = NA, or = TRUE, d3 = FALSE)

Arguments

`object`	Any `propr` or `propd` object.
`cutoff`	A cutoff argument for `object`, passed to `getResults`.
`propr.object, thetad.object, thetae.object`	A `propr` object or an appropriate `propd` object.
`propr.cutoff, thetad.cutoff, thetae.cutoff`	A cutoff argument passed to `getResults`.
`col1`	A character vector. Specifies which nodes to color `red` or `blue`, respectively.
`col2`	A character vector. Specifies which nodes to color `red` or `blue`, respectively.
`include`	This argument indicates which features by name should belong to a pair for that pair to get included in the results. Subset performed by `Partner %in% subset \| Pair %in% subset`.
`or`	A boolean. If `FALSE`, `include` subsets by `Partner %in% subset & Pair %in% subset`.
`d3`	A boolean. Use `rgl` to plot 3D network.

Value

A network object.

[Package propr version 4.2.6 Index]