R: Predicting Species Accumulation Curves

# Predicting Species Accumulation Curves

## Documentation for package ‘preseqR’ version 4.0.0

- DESCRIPTION file.

## Help Pages

preseqR-package | Predicting r-species accumulation curves
bbc.rSAC | BBC estimator
cs.rSAC | CS estimator
Dickens | Dickens' vocabulary
ds.rSAC | RFA estimator
ds.rSAC.bootstrap | RFA estimator with bootstrap
fisher.alpha | Parameter alpha in the logseries estimator
fisher.rSAC | Logseries estimator
FisherButterfly | Fisher's butterfly data
kmer.frac.curve | Fraction of k-mers observed at least r times
kmer.frac.curve.bootstrap | Fraction of k-mers observed at least r times with bootstrap
preseqR.interpolate.rSAC | Interpolation
preseqR.nonreplace.sampling | Sampling
preseqR.optimal.sequencing | Optimal amount of sequencing for scWGS
preseqR.rSAC | Best practice for r-SAC - a fast version
preseqR.rSAC.bootstrap | Best practice for r-SAC
preseqR.rSAC.sequencing.rmdup | Predicting r-SAC in WES/WGS
preseqR.sample.cov | Predicting generalized sample coverage
preseqR.sample.cov.bootstrap | Predicting generalized sample coverage with bootstrap
preseqR.simu.hist | Simulation
preseqR.ztnb.em | Fitting a zero-truncated negative binomial distribution
Shakespeare | Shakespeare's word type frequencies
SRR061157_k31 | k-mer counts of a metagenomic data
SRR1301329_1M_base | Coverage histogram of a WES data
SRR1301329_1M_read | Read counts of a WES data
SRR1301329_base | Coverage histogram of a WES data
SRR1301329_read | Read counts of a WES data
SRR611492 | Coverage histogram of a scWGS data
SRR611492_5M | Coverage histogram of a scWGS data
Twitter | Social network
WillButterfly | Fisher's butterfly data
ztnb.rSAC | ZTNB estimator
ztp.rSAC | ZTP estimator