R: Coverage histogram of a WES data

SRR1301329_1M_base {preseqR} | R Documentation

## Coverage histogram of a WES data

### Description

The coverage histogram is based on a whole-exome sequencing (WES) data from Simons Foundation Autism Research Initiative with the accession number SRR1301329. One million reads are randomly sampled from the raw data to generate this coverage histogram.

### Details

A two-column matrix. The first column is the frequency j = 1,2,…; and the second column is N_j, the number of nucleotides in the genome covered exactly j times.

### References

Simons Foundation Autism Research Initiative (https://www.sfari.org/).

### Examples

    ##load library
    library(preseqR)

    ##load data
    data(SRR1301329_1M_base)

[Package preseqR version 4.0.0 Index]